miRNA display CGI


Results 1 - 20 of 96 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 4812 0.7 0.783365
Target:  5'- -uGCAUCAUGUuugucggauGACCCGUGCGaaCGCGc -3'
miRNA:   3'- guCGUGGUACA---------CUGGGCACGC--GUGCu -5'
14516 3' -56.9 NC_003521.1 + 17429 0.66 0.932227
Target:  5'- gGGCGCCAcacGGCCCGcgucgggGCGcCGCGAu -3'
miRNA:   3'- gUCGUGGUacaCUGGGCa------CGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 17495 0.67 0.91022
Target:  5'- gCGGCGCCGccgGUcacggcgguucccGGCCCGgcgGCGCGgGAu -3'
miRNA:   3'- -GUCGUGGUa--CA-------------CUGGGCa--CGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 17667 0.71 0.718298
Target:  5'- gGGCACCAcgGUGGCCC-UGCGUAaccCGGc -3'
miRNA:   3'- gUCGUGGUa-CACUGGGcACGCGU---GCU- -5'
14516 3' -56.9 NC_003521.1 + 19171 0.67 0.916493
Target:  5'- aCGGCGCUG-GUGGCCgacGUGCACGAg -3'
miRNA:   3'- -GUCGUGGUaCACUGGgcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 23395 0.72 0.679415
Target:  5'- gAGCACCGUGUu-CCUGUGCuGCACc- -3'
miRNA:   3'- gUCGUGGUACAcuGGGCACG-CGUGcu -5'
14516 3' -56.9 NC_003521.1 + 27109 0.66 0.932227
Target:  5'- aCGGCGCgCA---GGCCgGUGCGgGCGAa -3'
miRNA:   3'- -GUCGUG-GUacaCUGGgCACGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 31085 0.69 0.834301
Target:  5'- cCGGCugCc-GUGGCugCCGcUGCGCACGAc -3'
miRNA:   3'- -GUCGugGuaCACUG--GGC-ACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 31821 0.71 0.718298
Target:  5'- gAGCGCCGUcucGGCCCGgGCGC-CGAa -3'
miRNA:   3'- gUCGUGGUAca-CUGGGCaCGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 33672 0.67 0.904889
Target:  5'- cCAGCgACCGgccGUGGCCCGcacguaacgcUGCaGCugGAc -3'
miRNA:   3'- -GUCG-UGGUa--CACUGGGC----------ACG-CGugCU- -5'
14516 3' -56.9 NC_003521.1 + 34141 0.66 0.921961
Target:  5'- gCAGgGCCA---GGCCCacGCGCACGAa -3'
miRNA:   3'- -GUCgUGGUacaCUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 37415 0.69 0.80951
Target:  5'- gGGCcugACCGUGUGGCgCG-GCGC-CGAg -3'
miRNA:   3'- gUCG---UGGUACACUGgGCaCGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 43073 0.72 0.68921
Target:  5'- gAGCACCAggagaagaucGUGGCCUacGCGCGCGAc -3'
miRNA:   3'- gUCGUGGUa---------CACUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 43341 0.68 0.885848
Target:  5'- -cGCGCCGUccGGCCCGccGCGCGUGAa -3'
miRNA:   3'- guCGUGGUAcaCUGGGCa-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 46194 0.68 0.864921
Target:  5'- -uGCACgGUGcugGugUCGUGCGCGCuGAu -3'
miRNA:   3'- guCGUGgUACa--CugGGCACGCGUG-CU- -5'
14516 3' -56.9 NC_003521.1 + 50328 0.66 0.921961
Target:  5'- aGGCAgCggGUccucGGCCCGUuuGCGCugGAu -3'
miRNA:   3'- gUCGUgGuaCA----CUGGGCA--CGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 53365 0.67 0.916493
Target:  5'- gCAGCACCGUcccgcUGACgCG-GCGCACc- -3'
miRNA:   3'- -GUCGUGGUAc----ACUGgGCaCGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 54530 0.67 0.918707
Target:  5'- aCGGCGCCGcUGgGGCCCGgcggcuuuuugacguUGCGCuuGAc -3'
miRNA:   3'- -GUCGUGGU-ACaCUGGGC---------------ACGCGugCU- -5'
14516 3' -56.9 NC_003521.1 + 55953 0.68 0.857546
Target:  5'- gAGCACCGUGUGcagccccaccACgCCGaUGUGCAgGGg -3'
miRNA:   3'- gUCGUGGUACAC----------UG-GGC-ACGCGUgCU- -5'
14516 3' -56.9 NC_003521.1 + 56129 0.7 0.756077
Target:  5'- cCAGCACCAcgucgggcgagUGcGGCUCGUgcugcucgcuGCGCGCGAa -3'
miRNA:   3'- -GUCGUGGU-----------ACaCUGGGCA----------CGCGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.