miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 226823 0.67 0.904889
Target:  5'- aCAGCGCCAUGggguccucGCCCGccgccGCGC-CGGg -3'
miRNA:   3'- -GUCGUGGUACac------UGGGCa----CGCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 225130 0.66 0.932227
Target:  5'- aCAGCACCuggucgacGUGguugcgGACCCaGUcGCGCACc- -3'
miRNA:   3'- -GUCGUGG--------UACa-----CUGGG-CA-CGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 223165 0.66 0.932227
Target:  5'- gGGcCACCGUgGUGcCCCGgugcugGCGUACGu -3'
miRNA:   3'- gUC-GUGGUA-CACuGGGCa-----CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 220508 0.68 0.885848
Target:  5'- gCAGCAgCGUgGUGGCCUccugGUGCuGCAUGGc -3'
miRNA:   3'- -GUCGUgGUA-CACUGGG----CACG-CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 219675 0.68 0.885848
Target:  5'- aCAGC-CCcgGggGGCCCGcGCGgACGGa -3'
miRNA:   3'- -GUCGuGGuaCa-CUGGGCaCGCgUGCU- -5'
14516 3' -56.9 NC_003521.1 + 216350 0.67 0.89241
Target:  5'- uGGcCACCgaggGUGUGagGCCCGUGgucCGCGCGGa -3'
miRNA:   3'- gUC-GUGG----UACAC--UGGGCAC---GCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 215954 0.66 0.945954
Target:  5'- -cGCACCAUGagGACCUGcUGCGa--GAg -3'
miRNA:   3'- guCGUGGUACa-CUGGGC-ACGCgugCU- -5'
14516 3' -56.9 NC_003521.1 + 214577 0.66 0.921961
Target:  5'- gCAGCGCUGgc-GuuCCGUGCGCgACGAg -3'
miRNA:   3'- -GUCGUGGUacaCugGGCACGCG-UGCU- -5'
14516 3' -56.9 NC_003521.1 + 212639 0.66 0.932227
Target:  5'- gGGCgacuugGCCAUGcGACCCGaagaggGCGuCGCGGg -3'
miRNA:   3'- gUCG------UGGUACaCUGGGCa-----CGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 212423 0.66 0.9416
Target:  5'- uCAGCAggcCCAUGaUGGCCag-GCGuCGCGAc -3'
miRNA:   3'- -GUCGU---GGUAC-ACUGGgcaCGC-GUGCU- -5'
14516 3' -56.9 NC_003521.1 + 212063 0.69 0.800935
Target:  5'- gCAGCGCUAgggcgGUGGCgCGgcccGCGCGCGu -3'
miRNA:   3'- -GUCGUGGUa----CACUGgGCa---CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 208870 0.71 0.727867
Target:  5'- aCGGCACCAUGUG-CCUGUuccuggaccccGaggaGCGCGAg -3'
miRNA:   3'- -GUCGUGGUACACuGGGCA-----------Cg---CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 206097 0.67 0.904889
Target:  5'- uCGGUACCcgGUG-UUCGUggacGCGCACGGc -3'
miRNA:   3'- -GUCGUGGuaCACuGGGCA----CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 205755 0.66 0.927206
Target:  5'- gAGCGCCcgGaggaaGACCUGUGUgguggcgccGCACGGc -3'
miRNA:   3'- gUCGUGGuaCa----CUGGGCACG---------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 205361 0.68 0.885848
Target:  5'- -uGCGCCGUGcacGACCUGcGCgGCAUGAu -3'
miRNA:   3'- guCGUGGUACa--CUGGGCaCG-CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 204142 0.68 0.84998
Target:  5'- cCAGCugCGUGUGcagaaAgCCGaUGUGCACGu -3'
miRNA:   3'- -GUCGugGUACAC-----UgGGC-ACGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 204001 0.69 0.84223
Target:  5'- gCAGCGCCGgcccGUGGCgCGUGauCACGGc -3'
miRNA:   3'- -GUCGUGGUa---CACUGgGCACgcGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 203357 0.81 0.250492
Target:  5'- gCGGCACCAcgGUGGCCC--GCGCGCGAg -3'
miRNA:   3'- -GUCGUGGUa-CACUGGGcaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 200478 0.67 0.89241
Target:  5'- gCAGCGCCGUGauccUGGCCaaacuGgcgGCGCGCa- -3'
miRNA:   3'- -GUCGUGGUAC----ACUGGg----Ca--CGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 198694 0.66 0.937025
Target:  5'- cCGGCACguUGaaagucUGACCgCGUuugacGCGCGCGGg -3'
miRNA:   3'- -GUCGUGguAC------ACUGG-GCA-----CGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.