miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 3' -56.9 NC_003521.1 + 56935 0.7 0.792217
Target:  5'- cCAGCACCuc--GGCCuCGUGCcGCACGu -3'
miRNA:   3'- -GUCGUGGuacaCUGG-GCACG-CGUGCu -5'
14516 3' -56.9 NC_003521.1 + 61503 0.67 0.916493
Target:  5'- gGGCACCc---GAacgaCGUGCGCGCGAa -3'
miRNA:   3'- gUCGUGGuacaCUgg--GCACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 64968 0.68 0.857546
Target:  5'- aAGCugCcgGUGACCU---CGCACGAc -3'
miRNA:   3'- gUCGugGuaCACUGGGcacGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 67501 0.66 0.937025
Target:  5'- -cGCACCcUGUGGCCCcagGUGuCGC-UGAg -3'
miRNA:   3'- guCGUGGuACACUGGG---CAC-GCGuGCU- -5'
14516 3' -56.9 NC_003521.1 + 73099 0.66 0.921961
Target:  5'- gCAGCGCCAcgcaauccaccGUGGCCacggagGUGCuGCACGGc -3'
miRNA:   3'- -GUCGUGGUa----------CACUGGg-----CACG-CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 73959 0.72 0.659722
Target:  5'- cCAGCACCGUGUG-CCUGcUGUGCGa-- -3'
miRNA:   3'- -GUCGUGGUACACuGGGC-ACGCGUgcu -5'
14516 3' -56.9 NC_003521.1 + 74128 0.67 0.904889
Target:  5'- gGGCGCCGUGcagGACgaCGUGgCGCGCc- -3'
miRNA:   3'- gUCGUGGUACa--CUGg-GCAC-GCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 74183 0.67 0.89241
Target:  5'- -uGCGCCGcGgcGCCCG-GCGCGCGGc -3'
miRNA:   3'- guCGUGGUaCacUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 74557 0.71 0.698961
Target:  5'- -cGCGCCGUGcGcguGCCCGUGaGCACGGc -3'
miRNA:   3'- guCGUGGUACaC---UGGGCACgCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 78457 0.69 0.8262
Target:  5'- uCGGCGCgGcUGggaacgcGGCCCG-GCGCGCGAc -3'
miRNA:   3'- -GUCGUGgU-ACa------CUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 80123 0.66 0.945954
Target:  5'- gAGCGCCcuuGUGUuuuugcGGCCgGUGCuGCGCGu -3'
miRNA:   3'- gUCGUGG---UACA------CUGGgCACG-CGUGCu -5'
14516 3' -56.9 NC_003521.1 + 86351 0.67 0.904889
Target:  5'- cCGGCGCCGgcggugccgGUGACCaacaGCGUGCGGa -3'
miRNA:   3'- -GUCGUGGUa--------CACUGGgca-CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 86811 0.73 0.620148
Target:  5'- -uGCACCAggugcUGcgGACCCGUGCGUGCu- -3'
miRNA:   3'- guCGUGGU-----ACa-CUGGGCACGCGUGcu -5'
14516 3' -56.9 NC_003521.1 + 87268 0.67 0.914243
Target:  5'- -uGCGCCGUGcgcguggccaacgGGCCCGagGUGCGCGu -3'
miRNA:   3'- guCGUGGUACa------------CUGGGCa-CGCGUGCu -5'
14516 3' -56.9 NC_003521.1 + 87984 0.66 0.945954
Target:  5'- gAGgACUcgGUGaAUCUGgggGCGCGCGAc -3'
miRNA:   3'- gUCgUGGuaCAC-UGGGCa--CGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 88260 0.69 0.84223
Target:  5'- gCGGCGCCAgcuUGACCgaGUGCuggcugucguGCACGAa -3'
miRNA:   3'- -GUCGUGGUac-ACUGGg-CACG----------CGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 92225 0.68 0.84998
Target:  5'- gAGCGCUGUGagGGCCCGacggGCGCcgcGCGGu -3'
miRNA:   3'- gUCGUGGUACa-CUGGGCa---CGCG---UGCU- -5'
14516 3' -56.9 NC_003521.1 + 97336 0.67 0.898758
Target:  5'- uUAGCACCGUcucgcUGugCU-UGCGCGCGAu -3'
miRNA:   3'- -GUCGUGGUAc----ACugGGcACGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 99659 0.68 0.864921
Target:  5'- gAGCACaCGUaggccaUGGCCCG-GUGCACGGg -3'
miRNA:   3'- gUCGUG-GUAc-----ACUGGGCaCGCGUGCU- -5'
14516 3' -56.9 NC_003521.1 + 100968 0.72 0.679415
Target:  5'- aAGCGCCGU---GCCCGgcGCGCACGGc -3'
miRNA:   3'- gUCGUGGUAcacUGGGCa-CGCGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.