miRNA display CGI


Results 41 - 60 of 374 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 227298 0.66 0.845097
Target:  5'- cGCgCGUAGCggaACAGGCUCAUGcCCGu- -3'
miRNA:   3'- uCG-GCAUCG---UGUCCGGGUACcGGUgg -5'
14516 5' -59.7 NC_003521.1 + 23463 0.66 0.845097
Target:  5'- uGGCCGUguuacacagcaAGUACgAGGaCC--GGCCGCCg -3'
miRNA:   3'- -UCGGCA-----------UCGUG-UCCgGGuaCCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 155266 0.66 0.845097
Target:  5'- cGGCgGcGGCGCcucAGGCCCGUcgcugGGCaaCGCCa -3'
miRNA:   3'- -UCGgCaUCGUG---UCCGGGUA-----CCG--GUGG- -5'
14516 5' -59.7 NC_003521.1 + 18489 0.66 0.845097
Target:  5'- cGCC-UGGaggaGCu-GCCCGUGuGCCACCa -3'
miRNA:   3'- uCGGcAUCg---UGucCGGGUAC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 237173 0.66 0.845097
Target:  5'- cGCCGaGGCAgAcGGCggcggCCGUGGCaCGCUa -3'
miRNA:   3'- uCGGCaUCGUgU-CCG-----GGUACCG-GUGG- -5'
14516 5' -59.7 NC_003521.1 + 88333 0.66 0.845097
Target:  5'- aGGCCuaucuGCACcucuccuucgGGGagaUCGUGGCCGCCg -3'
miRNA:   3'- -UCGGcau--CGUG----------UCCg--GGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 136766 0.66 0.842788
Target:  5'- gAGCUGcUGGCcuaccugcgcgacaGCGGGCUCAcGGUCACg -3'
miRNA:   3'- -UCGGC-AUCG--------------UGUCCGGGUaCCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 74525 0.66 0.837339
Target:  5'- uGGCCGUAcGCAacgAGGCCaCGcGGaCCAgCCg -3'
miRNA:   3'- -UCGGCAU-CGUg--UCCGG-GUaCC-GGU-GG- -5'
14516 5' -59.7 NC_003521.1 + 237397 0.66 0.837339
Target:  5'- cGUCGgcaUGGCGgGGGUCUgaGUGGCC-CCa -3'
miRNA:   3'- uCGGC---AUCGUgUCCGGG--UACCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 35471 0.66 0.837339
Target:  5'- aGGUCGU-GCAC-GGCgCAgcuGCCGCCg -3'
miRNA:   3'- -UCGGCAuCGUGuCCGgGUac-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 77448 0.66 0.837339
Target:  5'- uGCCGccGUugGuGCCCGUGacacuGCCGCCg -3'
miRNA:   3'- uCGGCauCGugUcCGGGUAC-----CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 155059 0.66 0.837339
Target:  5'- cGGCUGcgaGGCGCuGGCCaccucgcuCAUGGCCAa- -3'
miRNA:   3'- -UCGGCa--UCGUGuCCGG--------GUACCGGUgg -5'
14516 5' -59.7 NC_003521.1 + 43473 0.66 0.837339
Target:  5'- gGGCC--AGCGCGGcGgCCGugcUGGCCGCg -3'
miRNA:   3'- -UCGGcaUCGUGUC-CgGGU---ACCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 17141 0.66 0.837339
Target:  5'- uGCCGgcGCGCuucGCCCGacccucccUGGCCAa- -3'
miRNA:   3'- uCGGCauCGUGuc-CGGGU--------ACCGGUgg -5'
14516 5' -59.7 NC_003521.1 + 163835 0.66 0.837339
Target:  5'- uGCCGU-GC-Cu-GCCCAUcGCCGCCa -3'
miRNA:   3'- uCGGCAuCGuGucCGGGUAcCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 2611 0.66 0.82941
Target:  5'- cGCCGUGccgacGCcCAGGCUCuUGGCC-UCg -3'
miRNA:   3'- uCGGCAU-----CGuGUCCGGGuACCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 139418 0.66 0.82941
Target:  5'- cAGCC---GCACGGGCUCuccugcGUGGCCGUCa -3'
miRNA:   3'- -UCGGcauCGUGUCCGGG------UACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 125898 0.66 0.82941
Target:  5'- cGCCcagcauGCACgAGGCCC--GGCCGCg -3'
miRNA:   3'- uCGGcau---CGUG-UCCGGGuaCCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 165661 0.66 0.82941
Target:  5'- cGCCGcgcGGCACcaugcguccAGGCauccCCAggucGGCCGCCg -3'
miRNA:   3'- uCGGCa--UCGUG---------UCCG----GGUa---CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 125789 0.66 0.82941
Target:  5'- cAGCCGgccuGCG-AGGCCCAgggguugugcgUGGCCGu- -3'
miRNA:   3'- -UCGGCau--CGUgUCCGGGU-----------ACCGGUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.