miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 240626 0.67 0.964251
Target:  5'- gGCGUGCGGCggGCCGgccGGUCGg-ACGUg -3'
miRNA:   3'- gUGCGCGCCG--UGGUa--CUAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 29263 0.67 0.960898
Target:  5'- aGCGUGCGGCGCUAcuggcuguacGGUUAUCcCGUg -3'
miRNA:   3'- gUGCGCGCCGUGGUa---------CUAGUAGuGCA- -5'
14520 3' -54.8 NC_003521.1 + 87113 0.67 0.957334
Target:  5'- -cUGCGUGGCGCCcaccaccUCGUCGCGa -3'
miRNA:   3'- guGCGCGCCGUGGuacu---AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 14495 0.67 0.957334
Target:  5'- gGCGCGC-GCACCAUGcaCAUCuuGUu -3'
miRNA:   3'- gUGCGCGcCGUGGUACuaGUAGugCA- -5'
14520 3' -54.8 NC_003521.1 + 137445 0.67 0.957334
Target:  5'- gCACGCGCGGCugCccGAcacgGUCuGCGUg -3'
miRNA:   3'- -GUGCGCGCCGugGuaCUag--UAG-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 69113 0.67 0.957334
Target:  5'- cCACGC-CGGCGaCGUGAcguuguuugUCGUCACGc -3'
miRNA:   3'- -GUGCGcGCCGUgGUACU---------AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 188741 0.67 0.953554
Target:  5'- --aGCGCGGCcCuCAUGGUgGUCGCuGUa -3'
miRNA:   3'- gugCGCGCCGuG-GUACUAgUAGUG-CA- -5'
14520 3' -54.8 NC_003521.1 + 184497 0.67 0.953164
Target:  5'- -cUGCGCGGCcgcGCCucgGUGGUCuucauccAUCACGUg -3'
miRNA:   3'- guGCGCGCCG---UGG---UACUAG-------UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 19457 0.68 0.945333
Target:  5'- gGCGCgGCGGgACCAUG-UCGcugCGCGg -3'
miRNA:   3'- gUGCG-CGCCgUGGUACuAGUa--GUGCa -5'
14520 3' -54.8 NC_003521.1 + 197482 0.68 0.945333
Target:  5'- uCACGCGCGGCggGCCG-GA-CggCGCGg -3'
miRNA:   3'- -GUGCGCGCCG--UGGUaCUaGuaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 66662 0.68 0.940885
Target:  5'- -gUGCGCGGCcugcagGCCcUGGagCGUCACGUg -3'
miRNA:   3'- guGCGCGCCG------UGGuACUa-GUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 155616 0.68 0.940428
Target:  5'- --gGCGCGGCGCCGggUGAcgcagugUCGUaCGCGa -3'
miRNA:   3'- gugCGCGCCGUGGU--ACU-------AGUA-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 92730 0.68 0.936211
Target:  5'- --aGCGUGGCGCCggGAcCAgagCACGg -3'
miRNA:   3'- gugCGCGCCGUGGuaCUaGUa--GUGCa -5'
14520 3' -54.8 NC_003521.1 + 220195 0.68 0.931307
Target:  5'- aGCGCGCGGCuCUccGAgcaCAUCugGa -3'
miRNA:   3'- gUGCGCGCCGuGGuaCUa--GUAGugCa -5'
14520 3' -54.8 NC_003521.1 + 2476 0.68 0.931307
Target:  5'- gUACGCGaCGGCGCCGgccagcUGAauuucUUAUUACGUc -3'
miRNA:   3'- -GUGCGC-GCCGUGGU------ACU-----AGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 112085 0.68 0.931307
Target:  5'- cCACGgGCucgGGCGCCAaGAUCAgcgGCGUg -3'
miRNA:   3'- -GUGCgCG---CCGUGGUaCUAGUag-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 167605 0.68 0.926174
Target:  5'- gGCGCGCagaGGCGCCGcaggcgcucggGGUCgGUCACGUc -3'
miRNA:   3'- gUGCGCG---CCGUGGUa----------CUAG-UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 224687 0.68 0.926173
Target:  5'- cUugGCGUGGCGCCcgGG-CGuguggaaguUCACGUc -3'
miRNA:   3'- -GugCGCGCCGUGGuaCUaGU---------AGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 118397 0.68 0.92081
Target:  5'- cCAC-CG-GGCGuuGUGGUCGUCGCGUc -3'
miRNA:   3'- -GUGcGCgCCGUggUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 129057 0.68 0.92081
Target:  5'- gCGCGCGCaGCACCGUGugCAUggccucCACGUu -3'
miRNA:   3'- -GUGCGCGcCGUGGUACuaGUA------GUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.