miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 114046 0.66 0.970342
Target:  5'- cCACGCGCaGCGCCAgggccugccgGA-CuUCACGUc -3'
miRNA:   3'- -GUGCGCGcCGUGGUa---------CUaGuAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 118212 0.66 0.980231
Target:  5'- aGCGCGCGGCcGCCgccgucgccgggGUGGUCAaugccucgugUCGgGUg -3'
miRNA:   3'- gUGCGCGCCG-UGG------------UACUAGU----------AGUgCA- -5'
14520 3' -54.8 NC_003521.1 + 118397 0.68 0.92081
Target:  5'- cCAC-CG-GGCGuuGUGGUCGUCGCGUc -3'
miRNA:   3'- -GUGcGCgCCGUggUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 122960 0.7 0.847183
Target:  5'- cCACGUGCGGgguaGCCA-GAcCGUCACGg -3'
miRNA:   3'- -GUGCGCGCCg---UGGUaCUaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 123957 0.66 0.975652
Target:  5'- cCGCGCcacuGCGcGCGCa--GGUCGUCGCGg -3'
miRNA:   3'- -GUGCG----CGC-CGUGguaCUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 127277 0.66 0.970342
Target:  5'- cCAgGCGCGGCacguccgacacGCCGUGGUgG-CGCGc -3'
miRNA:   3'- -GUgCGCGCCG-----------UGGUACUAgUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 127385 0.66 0.975652
Target:  5'- -uCGCGCGcGUACCA-GggCGUCAgGUa -3'
miRNA:   3'- guGCGCGC-CGUGGUaCuaGUAGUgCA- -5'
14520 3' -54.8 NC_003521.1 + 128025 0.67 0.964251
Target:  5'- -gUGCGCGGCACCucGcgCcgCACGc -3'
miRNA:   3'- guGCGCGCCGUGGuaCuaGuaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 129057 0.68 0.92081
Target:  5'- gCGCGCGCaGCACCGUGugCAUggccucCACGUu -3'
miRNA:   3'- -GUGCGCGcCGUGGUACuaGUA------GUGCA- -5'
14520 3' -54.8 NC_003521.1 + 129246 0.72 0.79707
Target:  5'- cCACGCGCGGCACCuggauGUGGaagagCAUCuugccCGUg -3'
miRNA:   3'- -GUGCGCGCCGUGG-----UACUa----GUAGu----GCA- -5'
14520 3' -54.8 NC_003521.1 + 131567 0.7 0.876941
Target:  5'- cCACG-GUGGUggGCCAgagccUGAUCAUCACGc -3'
miRNA:   3'- -GUGCgCGCCG--UGGU-----ACUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 132445 0.66 0.975652
Target:  5'- aGCGUGCGGCGCCugucuggccuuAUGGugcuUCGUCcUGUg -3'
miRNA:   3'- gUGCGCGCCGUGG-----------UACU----AGUAGuGCA- -5'
14520 3' -54.8 NC_003521.1 + 135016 0.71 0.822876
Target:  5'- uCugGCuGCcgGGCACCGUGGccugCGUCACGg -3'
miRNA:   3'- -GugCG-CG--CCGUGGUACUa---GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 136880 0.67 0.964251
Target:  5'- gGCGgGUGGCGCC--GGUguUCGCGg -3'
miRNA:   3'- gUGCgCGCCGUGGuaCUAguAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 137445 0.67 0.957334
Target:  5'- gCACGCGCGGCugCccGAcacgGUCuGCGUg -3'
miRNA:   3'- -GUGCGCGCCGugGuaCUag--UAG-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 137614 0.66 0.980231
Target:  5'- cCGCGCGCuGGaCGCCuaccgcucGcgCAUCGCGg -3'
miRNA:   3'- -GUGCGCG-CC-GUGGua------CuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 139598 0.66 0.970342
Target:  5'- gGCGcCGCGGCACCAgGAa---CACGg -3'
miRNA:   3'- gUGC-GCGCCGUGGUaCUaguaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 145040 0.69 0.897076
Target:  5'- uCGCGUggccgaGCGGCACgAUGAcCGUCugGg -3'
miRNA:   3'- -GUGCG------CGCCGUGgUACUaGUAGugCa -5'
14520 3' -54.8 NC_003521.1 + 145589 0.66 0.970342
Target:  5'- gCACGaCGCGGCGgCCGUGG-CcUCGCu- -3'
miRNA:   3'- -GUGC-GCGCCGU-GGUACUaGuAGUGca -5'
14520 3' -54.8 NC_003521.1 + 148591 0.69 0.909396
Target:  5'- -cCGCGCGGCGCCcgucgGGcccucacagcgcUCGUCGCGc -3'
miRNA:   3'- guGCGCGCCGUGGua---CU------------AGUAGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.