Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 3' | -54.8 | NC_003521.1 | + | 63966 | 0.69 | 0.903348 |
Target: 5'- gCugGCGCGGCGCCAUaaccaGAUCcUgGCc- -3' miRNA: 3'- -GugCGCGCCGUGGUA-----CUAGuAgUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 64768 | 0.66 | 0.967397 |
Target: 5'- --gGCGCGGCACCGggcGAUCccaaGCGc -3' miRNA: 3'- gugCGCGCCGUGGUa--CUAGuag-UGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 66662 | 0.68 | 0.940885 |
Target: 5'- -gUGCGCGGCcugcagGCCcUGGagCGUCACGUg -3' miRNA: 3'- guGCGCGCCG------UGGuACUa-GUAGUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 69113 | 0.67 | 0.957334 |
Target: 5'- cCACGC-CGGCGaCGUGAcguuguuugUCGUCACGc -3' miRNA: 3'- -GUGCGcGCCGUgGUACU---------AGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 71060 | 0.75 | 0.610179 |
Target: 5'- --aGCGCGGCGCCAugggccgacguugcUGAUCguaGUCGCGUc -3' miRNA: 3'- gugCGCGCCGUGGU--------------ACUAG---UAGUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 74198 | 0.71 | 0.84006 |
Target: 5'- gGCGCGCGGCccgacgccgucuucuGCCAcguccugcgacaggUGggCGUCACGg -3' miRNA: 3'- gUGCGCGCCG---------------UGGU--------------ACuaGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 74451 | 0.69 | 0.890581 |
Target: 5'- gUACGUGC-GCACCGUGuUCAgcgagCACGUc -3' miRNA: 3'- -GUGCGCGcCGUGGUACuAGUa----GUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 76151 | 0.69 | 0.915217 |
Target: 5'- gACGCGCacacGGCGCagguacaGGUCGUCGCGg -3' miRNA: 3'- gUGCGCG----CCGUGgua----CUAGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 87113 | 0.67 | 0.957334 |
Target: 5'- -cUGCGUGGCGCCcaccaccUCGUCGCGa -3' miRNA: 3'- guGCGCGCCGUGGuacu---AGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 89614 | 0.74 | 0.653307 |
Target: 5'- gGCGcCGCGGuCACCGUGGUggugacCGUCGCGg -3' miRNA: 3'- gUGC-GCGCC-GUGGUACUA------GUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 90854 | 0.66 | 0.973091 |
Target: 5'- gCAUGCGCGGCACaGUGc-CAaCGCGa -3' miRNA: 3'- -GUGCGCGCCGUGgUACuaGUaGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 91028 | 0.66 | 0.973091 |
Target: 5'- gCGCGUGCGccGCACCGUG-UCG--GCGUg -3' miRNA: 3'- -GUGCGCGC--CGUGGUACuAGUagUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 92730 | 0.68 | 0.936211 |
Target: 5'- --aGCGUGGCGCCggGAcCAgagCACGg -3' miRNA: 3'- gugCGCGCCGUGGuaCUaGUa--GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 92995 | 0.66 | 0.978029 |
Target: 5'- gGCuGCaCGGCACCGUGcaguUCcgCACGa -3' miRNA: 3'- gUG-CGcGCCGUGGUACu---AGuaGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 97552 | 0.66 | 0.980231 |
Target: 5'- aCAUGCGCGGguCgCA-GGUCAggcCGCGg -3' miRNA: 3'- -GUGCGCGCCguG-GUaCUAGUa--GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 102312 | 0.7 | 0.862462 |
Target: 5'- gGCGUccGCGGCAUCGUcGUCGUgCGCGUg -3' miRNA: 3'- gUGCG--CGCCGUGGUAcUAGUA-GUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 103133 | 0.72 | 0.751309 |
Target: 5'- aGCGCGCGGCggugcugcagcACCAggcgGAucUCGUCGCGc -3' miRNA: 3'- gUGCGCGCCG-----------UGGUa---CU--AGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 108954 | 0.75 | 0.633248 |
Target: 5'- aCACGCGCGGCACgAUGGcCGUgGCc- -3' miRNA: 3'- -GUGCGCGCCGUGgUACUaGUAgUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 110526 | 0.66 | 0.980231 |
Target: 5'- gAUGCGCGGCGCCGcGG-CcUCGCc- -3' miRNA: 3'- gUGCGCGCCGUGGUaCUaGuAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 112085 | 0.68 | 0.931307 |
Target: 5'- cCACGgGCucgGGCGCCAaGAUCAgcgGCGUg -3' miRNA: 3'- -GUGCgCG---CCGUGGUaCUAGUag-UGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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