miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 63966 0.69 0.903348
Target:  5'- gCugGCGCGGCGCCAUaaccaGAUCcUgGCc- -3'
miRNA:   3'- -GugCGCGCCGUGGUA-----CUAGuAgUGca -5'
14520 3' -54.8 NC_003521.1 + 64768 0.66 0.967397
Target:  5'- --gGCGCGGCACCGggcGAUCccaaGCGc -3'
miRNA:   3'- gugCGCGCCGUGGUa--CUAGuag-UGCa -5'
14520 3' -54.8 NC_003521.1 + 66662 0.68 0.940885
Target:  5'- -gUGCGCGGCcugcagGCCcUGGagCGUCACGUg -3'
miRNA:   3'- guGCGCGCCG------UGGuACUa-GUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 69113 0.67 0.957334
Target:  5'- cCACGC-CGGCGaCGUGAcguuguuugUCGUCACGc -3'
miRNA:   3'- -GUGCGcGCCGUgGUACU---------AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 71060 0.75 0.610179
Target:  5'- --aGCGCGGCGCCAugggccgacguugcUGAUCguaGUCGCGUc -3'
miRNA:   3'- gugCGCGCCGUGGU--------------ACUAG---UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 74198 0.71 0.84006
Target:  5'- gGCGCGCGGCccgacgccgucuucuGCCAcguccugcgacaggUGggCGUCACGg -3'
miRNA:   3'- gUGCGCGCCG---------------UGGU--------------ACuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 74451 0.69 0.890581
Target:  5'- gUACGUGC-GCACCGUGuUCAgcgagCACGUc -3'
miRNA:   3'- -GUGCGCGcCGUGGUACuAGUa----GUGCA- -5'
14520 3' -54.8 NC_003521.1 + 76151 0.69 0.915217
Target:  5'- gACGCGCacacGGCGCagguacaGGUCGUCGCGg -3'
miRNA:   3'- gUGCGCG----CCGUGgua----CUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 87113 0.67 0.957334
Target:  5'- -cUGCGUGGCGCCcaccaccUCGUCGCGa -3'
miRNA:   3'- guGCGCGCCGUGGuacu---AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 89614 0.74 0.653307
Target:  5'- gGCGcCGCGGuCACCGUGGUggugacCGUCGCGg -3'
miRNA:   3'- gUGC-GCGCC-GUGGUACUA------GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 90854 0.66 0.973091
Target:  5'- gCAUGCGCGGCACaGUGc-CAaCGCGa -3'
miRNA:   3'- -GUGCGCGCCGUGgUACuaGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 91028 0.66 0.973091
Target:  5'- gCGCGUGCGccGCACCGUG-UCG--GCGUg -3'
miRNA:   3'- -GUGCGCGC--CGUGGUACuAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 92730 0.68 0.936211
Target:  5'- --aGCGUGGCGCCggGAcCAgagCACGg -3'
miRNA:   3'- gugCGCGCCGUGGuaCUaGUa--GUGCa -5'
14520 3' -54.8 NC_003521.1 + 92995 0.66 0.978029
Target:  5'- gGCuGCaCGGCACCGUGcaguUCcgCACGa -3'
miRNA:   3'- gUG-CGcGCCGUGGUACu---AGuaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 97552 0.66 0.980231
Target:  5'- aCAUGCGCGGguCgCA-GGUCAggcCGCGg -3'
miRNA:   3'- -GUGCGCGCCguG-GUaCUAGUa--GUGCa -5'
14520 3' -54.8 NC_003521.1 + 102312 0.7 0.862462
Target:  5'- gGCGUccGCGGCAUCGUcGUCGUgCGCGUg -3'
miRNA:   3'- gUGCG--CGCCGUGGUAcUAGUA-GUGCA- -5'
14520 3' -54.8 NC_003521.1 + 103133 0.72 0.751309
Target:  5'- aGCGCGCGGCggugcugcagcACCAggcgGAucUCGUCGCGc -3'
miRNA:   3'- gUGCGCGCCG-----------UGGUa---CU--AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 108954 0.75 0.633248
Target:  5'- aCACGCGCGGCACgAUGGcCGUgGCc- -3'
miRNA:   3'- -GUGCGCGCCGUGgUACUaGUAgUGca -5'
14520 3' -54.8 NC_003521.1 + 110526 0.66 0.980231
Target:  5'- gAUGCGCGGCGCCGcGG-CcUCGCc- -3'
miRNA:   3'- gUGCGCGCCGUGGUaCUaGuAGUGca -5'
14520 3' -54.8 NC_003521.1 + 112085 0.68 0.931307
Target:  5'- cCACGgGCucgGGCGCCAaGAUCAgcgGCGUg -3'
miRNA:   3'- -GUGCgCG---CCGUGGUaCUAGUag-UGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.