miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 220145 0.66 0.975404
Target:  5'- gGCcCGUGaaggugaugaacaGCGCCAcGGUCAUCACGUa -3'
miRNA:   3'- gUGcGCGC-------------CGUGGUaCUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 61439 0.66 0.978029
Target:  5'- aGCGaGCGGCugCA-GGUCAUC-CGc -3'
miRNA:   3'- gUGCgCGCCGugGUaCUAGUAGuGCa -5'
14520 3' -54.8 NC_003521.1 + 168084 0.66 0.977568
Target:  5'- --aGCGCGGCACCAccGGUCGgaugcccuccaaCACGc -3'
miRNA:   3'- gugCGCGCCGUGGUa-CUAGUa-----------GUGCa -5'
14520 3' -54.8 NC_003521.1 + 163057 0.66 0.973091
Target:  5'- cUACGUGCGGCACUacGUGAagAgcCACGc -3'
miRNA:   3'- -GUGCGCGCCGUGG--UACUagUa-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 91028 0.66 0.973091
Target:  5'- gCGCGUGCGccGCACCGUG-UCG--GCGUg -3'
miRNA:   3'- -GUGCGCGC--CGUGGUACuAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 90854 0.66 0.973091
Target:  5'- gCAUGCGCGGCACaGUGc-CAaCGCGa -3'
miRNA:   3'- -GUGCGCGCCGUGgUACuaGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 163010 0.66 0.970342
Target:  5'- aGCGCGCuGCucACCAUGAUCu--GCGa -3'
miRNA:   3'- gUGCGCGcCG--UGGUACUAGuagUGCa -5'
14520 3' -54.8 NC_003521.1 + 118212 0.66 0.980231
Target:  5'- aGCGCGCGGCcGCCgccgucgccgggGUGGUCAaugccucgugUCGgGUg -3'
miRNA:   3'- gUGCGCGCCG-UGG------------UACUAGU----------AGUgCA- -5'
14520 3' -54.8 NC_003521.1 + 137614 0.66 0.980231
Target:  5'- cCGCGCGCuGGaCGCCuaccgcucGcgCAUCGCGg -3'
miRNA:   3'- -GUGCGCG-CC-GUGGua------CuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 127277 0.66 0.970342
Target:  5'- cCAgGCGCGGCacguccgacacGCCGUGGUgG-CGCGc -3'
miRNA:   3'- -GUgCGCGCCG-----------UGGUACUAgUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 195600 0.66 0.970342
Target:  5'- -cCGgGCGGC-CCuucGAUCAUCAUGc -3'
miRNA:   3'- guGCgCGCCGuGGua-CUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 172109 0.66 0.967092
Target:  5'- uGCGgGCGGCcgacggcGCCAcggucaUGAguUCGUCGCGg -3'
miRNA:   3'- gUGCgCGCCG-------UGGU------ACU--AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 92995 0.66 0.978029
Target:  5'- gGCuGCaCGGCACCGUGcaguUCcgCACGa -3'
miRNA:   3'- gUG-CGcGCCGUGGUACu---AGuaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 77 0.67 0.964251
Target:  5'- gGCGUGCGGCggGCCGgccGGUCGg-ACGUg -3'
miRNA:   3'- gUGCGCGCCG--UGGUa--CUAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 188741 0.67 0.953554
Target:  5'- --aGCGCGGCcCuCAUGGUgGUCGCuGUa -3'
miRNA:   3'- gugCGCGCCGuG-GUACUAgUAGUG-CA- -5'
14520 3' -54.8 NC_003521.1 + 184497 0.67 0.953164
Target:  5'- -cUGCGCGGCcgcGCCucgGUGGUCuucauccAUCACGUg -3'
miRNA:   3'- guGCGCGCCG---UGG---UACUAG-------UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 137445 0.67 0.957334
Target:  5'- gCACGCGCGGCugCccGAcacgGUCuGCGUg -3'
miRNA:   3'- -GUGCGCGCCGugGuaCUag--UAG-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 14495 0.67 0.957334
Target:  5'- gGCGCGC-GCACCAUGcaCAUCuuGUu -3'
miRNA:   3'- gUGCGCGcCGUGGUACuaGUAGugCA- -5'
14520 3' -54.8 NC_003521.1 + 29263 0.67 0.960898
Target:  5'- aGCGUGCGGCGCUAcuggcuguacGGUUAUCcCGUg -3'
miRNA:   3'- gUGCGCGCCGUGGUa---------CUAGUAGuGCA- -5'
14520 3' -54.8 NC_003521.1 + 136880 0.67 0.964251
Target:  5'- gGCGgGUGGCGCC--GGUguUCGCGg -3'
miRNA:   3'- gUGCgCGCCGUGGuaCUAguAGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.