miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 74198 0.71 0.84006
Target:  5'- gGCGCGCGGCccgacgccgucuucuGCCAcguccugcgacaggUGggCGUCACGg -3'
miRNA:   3'- gUGCGCGCCG---------------UGGU--------------ACuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 122960 0.7 0.847183
Target:  5'- cCACGUGCGGgguaGCCA-GAcCGUCACGg -3'
miRNA:   3'- -GUGCGCGCCg---UGGUaCUaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 170484 0.7 0.854919
Target:  5'- --aGCGCGGCgAUCGcgaaGAUCGUCACGa -3'
miRNA:   3'- gugCGCGCCG-UGGUa---CUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 36799 0.7 0.862462
Target:  5'- gACGCGCcuuucgGGCagGCCGUGAUCA-CGCGc -3'
miRNA:   3'- gUGCGCG------CCG--UGGUACUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 191703 0.7 0.862462
Target:  5'- cCGCaGCaGCGGCGCCGcGGUCAcCACGc -3'
miRNA:   3'- -GUG-CG-CGCCGUGGUaCUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 102312 0.7 0.862462
Target:  5'- gGCGUccGCGGCAUCGUcGUCGUgCGCGUg -3'
miRNA:   3'- gUGCG--CGCCGUGGUAcUAGUA-GUGCA- -5'
14520 3' -54.8 NC_003521.1 + 221910 0.7 0.869804
Target:  5'- gGCGCGCGGCGCCAcccuUCGgggcugcCGCGg -3'
miRNA:   3'- gUGCGCGCCGUGGUacu-AGUa------GUGCa -5'
14520 3' -54.8 NC_003521.1 + 131567 0.7 0.876941
Target:  5'- cCACG-GUGGUggGCCAgagccUGAUCAUCACGc -3'
miRNA:   3'- -GUGCgCGCCG--UGGU-----ACUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 165663 0.7 0.883869
Target:  5'- -cCGCGCGGCACCAUG--CGUC-Ca- -3'
miRNA:   3'- guGCGCGCCGUGGUACuaGUAGuGca -5'
14520 3' -54.8 NC_003521.1 + 27209 0.69 0.88859
Target:  5'- -cUGCGCGGCgACCGccaccccaacagccUGGUCAUCGCc- -3'
miRNA:   3'- guGCGCGCCG-UGGU--------------ACUAGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 74451 0.69 0.890581
Target:  5'- gUACGUGC-GCACCGUGuUCAgcgagCACGUc -3'
miRNA:   3'- -GUGCGCGcCGUGGUACuAGUa----GUGCA- -5'
14520 3' -54.8 NC_003521.1 + 150033 0.69 0.897076
Target:  5'- gCACGUGCGcgacgccacgcuGCACCGggUGGUCAUCGuCGa -3'
miRNA:   3'- -GUGCGCGC------------CGUGGU--ACUAGUAGU-GCa -5'
14520 3' -54.8 NC_003521.1 + 145040 0.69 0.897076
Target:  5'- uCGCGUggccgaGCGGCACgAUGAcCGUCugGg -3'
miRNA:   3'- -GUGCG------CGCCGUGgUACUaGUAGugCa -5'
14520 3' -54.8 NC_003521.1 + 55624 0.69 0.897076
Target:  5'- -cCGCGCGGCccacACCGaGggCGUCACGc -3'
miRNA:   3'- guGCGCGCCG----UGGUaCuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 192320 0.69 0.897076
Target:  5'- gGCGUcgGCGGCACCGUGGguacCGUCAg-- -3'
miRNA:   3'- gUGCG--CGCCGUGGUACUa---GUAGUgca -5'
14520 3' -54.8 NC_003521.1 + 205376 0.69 0.897076
Target:  5'- -cUGCGCGGCAUgAUGGacUAUCACGa -3'
miRNA:   3'- guGCGCGCCGUGgUACUa-GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 63966 0.69 0.903348
Target:  5'- gCugGCGCGGCGCCAUaaccaGAUCcUgGCc- -3'
miRNA:   3'- -GugCGCGCCGUGGUA-----CUAGuAgUGca -5'
14520 3' -54.8 NC_003521.1 + 148591 0.69 0.909396
Target:  5'- -cCGCGCGGCGCCcgucgGGcccucacagcgcUCGUCGCGc -3'
miRNA:   3'- guGCGCGCCGUGGua---CU------------AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 178937 0.69 0.911752
Target:  5'- aACG-GCGGCAUCugcucgcuauccgugGUGGUCGUCAUGg -3'
miRNA:   3'- gUGCgCGCCGUGG---------------UACUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 76151 0.69 0.915217
Target:  5'- gACGCGCacacGGCGCagguacaGGUCGUCGCGg -3'
miRNA:   3'- gUGCGCG----CCGUGgua----CUAGUAGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.