miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 152236 1.06 0.008909
Target:  5'- uCACGCGCGGCACCAUGAUCAUCACGUu -3'
miRNA:   3'- -GUGCGCGCCGUGGUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 149312 0.76 0.543746
Target:  5'- gACGaCGCGGcCGCCGUGGUC-UCACGc -3'
miRNA:   3'- gUGC-GCGCC-GUGGUACUAGuAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 15310 0.76 0.583211
Target:  5'- aCGCGCGaCGGCGCCGagcgggUGAUCAgCGCGc -3'
miRNA:   3'- -GUGCGC-GCCGUGGU------ACUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 71060 0.75 0.610179
Target:  5'- --aGCGCGGCGCCAugggccgacguugcUGAUCguaGUCGCGUc -3'
miRNA:   3'- gugCGCGCCGUGGU--------------ACUAG---UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 108954 0.75 0.633248
Target:  5'- aCACGCGCGGCACgAUGGcCGUgGCc- -3'
miRNA:   3'- -GUGCGCGCCGUGgUACUaGUAgUGca -5'
14520 3' -54.8 NC_003521.1 + 89614 0.74 0.653307
Target:  5'- gGCGcCGCGGuCACCGUGGUggugacCGUCGCGg -3'
miRNA:   3'- gUGC-GCGCC-GUGGUACUA------GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 200334 0.74 0.663316
Target:  5'- uGCGCuGCGGCGCCGUGGcgCGcCGCGg -3'
miRNA:   3'- gUGCG-CGCCGUGGUACUa-GUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 58827 0.73 0.732238
Target:  5'- aGCGCGUGGCgGCCGUGA-CGUUACu- -3'
miRNA:   3'- gUGCGCGCCG-UGGUACUaGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 41636 0.73 0.741819
Target:  5'- gGgGCGUGGCGcCCGUGGUCAUgAUGa -3'
miRNA:   3'- gUgCGCGCCGU-GGUACUAGUAgUGCa -5'
14520 3' -54.8 NC_003521.1 + 103133 0.72 0.751309
Target:  5'- aGCGCGCGGCggugcugcagcACCAggcgGAucUCGUCGCGc -3'
miRNA:   3'- gUGCGCGCCG-----------UGGUa---CU--AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 45351 0.72 0.751309
Target:  5'- gACGUGgaaCGGCGacCCAUGGUCGUUACGUc -3'
miRNA:   3'- gUGCGC---GCCGU--GGUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 228714 0.72 0.760697
Target:  5'- aGCGCgGCGGCGgCAUGAUUAUaCACa- -3'
miRNA:   3'- gUGCG-CGCCGUgGUACUAGUA-GUGca -5'
14520 3' -54.8 NC_003521.1 + 57157 0.72 0.779137
Target:  5'- cCACGCGCGGCA----GGUCGUCgGCGUg -3'
miRNA:   3'- -GUGCGCGCCGUgguaCUAGUAG-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 129246 0.72 0.79707
Target:  5'- cCACGCGCGGCACCuggauGUGGaagagCAUCuugccCGUg -3'
miRNA:   3'- -GUGCGCGCCGUGG-----UACUa----GUAGu----GCA- -5'
14520 3' -54.8 NC_003521.1 + 166691 0.71 0.817829
Target:  5'- gGCGCGCcacgucguccugcacGGCGcCCAUGggCGUCGCGc -3'
miRNA:   3'- gUGCGCG---------------CCGU-GGUACuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 135016 0.71 0.822876
Target:  5'- uCugGCuGCcgGGCACCGUGGccugCGUCACGg -3'
miRNA:   3'- -GugCG-CG--CCGUGGUACUa---GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 62502 0.71 0.822876
Target:  5'- uCGCuaGCacGCGCCGUGAUCAUCACc- -3'
miRNA:   3'- -GUGcgCGc-CGUGGUACUAGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 60607 0.71 0.825378
Target:  5'- aCACGCGCGGCACCAccaacgccgagCGCGa -3'
miRNA:   3'- -GUGCGCGCCGUGGUacuagua----GUGCa -5'
14520 3' -54.8 NC_003521.1 + 37466 0.71 0.826208
Target:  5'- uCGCGCGCGGgcCACCGUGGUgccgcagggcaccccCAUCGCc- -3'
miRNA:   3'- -GUGCGCGCC--GUGGUACUA---------------GUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 34698 0.71 0.838457
Target:  5'- uGCGCGUcguaggcgaagacGGCGCCGUGcgCGUcCACGa -3'
miRNA:   3'- gUGCGCG-------------CCGUGGUACuaGUA-GUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.