miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 192320 0.69 0.897076
Target:  5'- gGCGUcgGCGGCACCGUGGguacCGUCAg-- -3'
miRNA:   3'- gUGCG--CGCCGUGGUACUa---GUAGUgca -5'
14520 3' -54.8 NC_003521.1 + 74198 0.71 0.84006
Target:  5'- gGCGCGCGGCccgacgccgucuucuGCCAcguccugcgacaggUGggCGUCACGg -3'
miRNA:   3'- gUGCGCGCCG---------------UGGU--------------ACuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 122960 0.7 0.847183
Target:  5'- cCACGUGCGGgguaGCCA-GAcCGUCACGg -3'
miRNA:   3'- -GUGCGCGCCg---UGGUaCUaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 170484 0.7 0.854919
Target:  5'- --aGCGCGGCgAUCGcgaaGAUCGUCACGa -3'
miRNA:   3'- gugCGCGCCG-UGGUa---CUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 102312 0.7 0.862462
Target:  5'- gGCGUccGCGGCAUCGUcGUCGUgCGCGUg -3'
miRNA:   3'- gUGCG--CGCCGUGGUAcUAGUA-GUGCA- -5'
14520 3' -54.8 NC_003521.1 + 36799 0.7 0.862462
Target:  5'- gACGCGCcuuucgGGCagGCCGUGAUCA-CGCGc -3'
miRNA:   3'- gUGCGCG------CCG--UGGUACUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 221910 0.7 0.869804
Target:  5'- gGCGCGCGGCGCCAcccuUCGgggcugcCGCGg -3'
miRNA:   3'- gUGCGCGCCGUGGUacu-AGUa------GUGCa -5'
14520 3' -54.8 NC_003521.1 + 165663 0.7 0.883869
Target:  5'- -cCGCGCGGCACCAUG--CGUC-Ca- -3'
miRNA:   3'- guGCGCGCCGUGGUACuaGUAGuGca -5'
14520 3' -54.8 NC_003521.1 + 150033 0.69 0.897076
Target:  5'- gCACGUGCGcgacgccacgcuGCACCGggUGGUCAUCGuCGa -3'
miRNA:   3'- -GUGCGCGC------------CGUGGU--ACUAGUAGU-GCa -5'
14520 3' -54.8 NC_003521.1 + 34698 0.71 0.838457
Target:  5'- uGCGCGUcguaggcgaagacGGCGCCGUGcgCGUcCACGa -3'
miRNA:   3'- gUGCGCG-------------CCGUGGUACuaGUA-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 37466 0.71 0.826208
Target:  5'- uCGCGCGCGGgcCACCGUGGUgccgcagggcaccccCAUCGCc- -3'
miRNA:   3'- -GUGCGCGCC--GUGGUACUA---------------GUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 60607 0.71 0.825378
Target:  5'- aCACGCGCGGCACCAccaacgccgagCGCGa -3'
miRNA:   3'- -GUGCGCGCCGUGGUacuagua----GUGCa -5'
14520 3' -54.8 NC_003521.1 + 149312 0.76 0.543746
Target:  5'- gACGaCGCGGcCGCCGUGGUC-UCACGc -3'
miRNA:   3'- gUGC-GCGCC-GUGGUACUAGuAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 71060 0.75 0.610179
Target:  5'- --aGCGCGGCGCCAugggccgacguugcUGAUCguaGUCGCGUc -3'
miRNA:   3'- gugCGCGCCGUGGU--------------ACUAG---UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 58827 0.73 0.732238
Target:  5'- aGCGCGUGGCgGCCGUGA-CGUUACu- -3'
miRNA:   3'- gUGCGCGCCG-UGGUACUaGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 41636 0.73 0.741819
Target:  5'- gGgGCGUGGCGcCCGUGGUCAUgAUGa -3'
miRNA:   3'- gUgCGCGCCGU-GGUACUAGUAgUGCa -5'
14520 3' -54.8 NC_003521.1 + 45351 0.72 0.751309
Target:  5'- gACGUGgaaCGGCGacCCAUGGUCGUUACGUc -3'
miRNA:   3'- gUGCGC---GCCGU--GGUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 57157 0.72 0.779137
Target:  5'- cCACGCGCGGCA----GGUCGUCgGCGUg -3'
miRNA:   3'- -GUGCGCGCCGUgguaCUAGUAG-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 129246 0.72 0.79707
Target:  5'- cCACGCGCGGCACCuggauGUGGaagagCAUCuugccCGUg -3'
miRNA:   3'- -GUGCGCGCCGUGG-----UACUa----GUAGu----GCA- -5'
14520 3' -54.8 NC_003521.1 + 62502 0.71 0.822876
Target:  5'- uCGCuaGCacGCGCCGUGAUCAUCACc- -3'
miRNA:   3'- -GUGcgCGc-CGUGGUACUAGUAGUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.