miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 15310 0.76 0.583211
Target:  5'- aCGCGCGaCGGCGCCGagcgggUGAUCAgCGCGc -3'
miRNA:   3'- -GUGCGC-GCCGUGGU------ACUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 2476 0.68 0.931307
Target:  5'- gUACGCGaCGGCGCCGgccagcUGAauuucUUAUUACGUc -3'
miRNA:   3'- -GUGCGC-GCCGUGGU------ACU-----AGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 92730 0.68 0.936211
Target:  5'- --aGCGUGGCGCCggGAcCAgagCACGg -3'
miRNA:   3'- gugCGCGCCGUGGuaCUaGUa--GUGCa -5'
14520 3' -54.8 NC_003521.1 + 110526 0.66 0.980231
Target:  5'- gAUGCGCGGCGCCGcGG-CcUCGCc- -3'
miRNA:   3'- gUGCGCGCCGUGGUaCUaGuAGUGca -5'
14520 3' -54.8 NC_003521.1 + 103133 0.72 0.751309
Target:  5'- aGCGCGCGGCggugcugcagcACCAggcgGAucUCGUCGCGc -3'
miRNA:   3'- gUGCGCGCCG-----------UGGUa---CU--AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 228714 0.72 0.760697
Target:  5'- aGCGCgGCGGCGgCAUGAUUAUaCACa- -3'
miRNA:   3'- gUGCG-CGCCGUgGUACUAGUA-GUGca -5'
14520 3' -54.8 NC_003521.1 + 135016 0.71 0.822876
Target:  5'- uCugGCuGCcgGGCACCGUGGccugCGUCACGg -3'
miRNA:   3'- -GugCG-CG--CCGUGGUACUa---GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 191703 0.7 0.862462
Target:  5'- cCGCaGCaGCGGCGCCGcGGUCAcCACGc -3'
miRNA:   3'- -GUG-CG-CGCCGUGGUaCUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 74451 0.69 0.890581
Target:  5'- gUACGUGC-GCACCGUGuUCAgcgagCACGUc -3'
miRNA:   3'- -GUGCGCGcCGUGGUACuAGUa----GUGCA- -5'
14520 3' -54.8 NC_003521.1 + 167605 0.68 0.926174
Target:  5'- gGCGCGCagaGGCGCCGcaggcgcucggGGUCgGUCACGUc -3'
miRNA:   3'- gUGCGCG---CCGUGGUa----------CUAG-UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 178937 0.69 0.911752
Target:  5'- aACG-GCGGCAUCugcucgcuauccgugGUGGUCGUCAUGg -3'
miRNA:   3'- gUGCgCGCCGUGG---------------UACUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 27209 0.69 0.88859
Target:  5'- -cUGCGCGGCgACCGccaccccaacagccUGGUCAUCGCc- -3'
miRNA:   3'- guGCGCGCCG-UGGU--------------ACUAGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 108954 0.75 0.633248
Target:  5'- aCACGCGCGGCACgAUGGcCGUgGCc- -3'
miRNA:   3'- -GUGCGCGCCGUGgUACUaGUAgUGca -5'
14520 3' -54.8 NC_003521.1 + 203697 0.69 0.915217
Target:  5'- -cCGCGCGGCauguugcgcGCCGUGAUCuuGUC-CGa -3'
miRNA:   3'- guGCGCGCCG---------UGGUACUAG--UAGuGCa -5'
14520 3' -54.8 NC_003521.1 + 89614 0.74 0.653307
Target:  5'- gGCGcCGCGGuCACCGUGGUggugacCGUCGCGg -3'
miRNA:   3'- gUGC-GCGCC-GUGGUACUA------GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 131567 0.7 0.876941
Target:  5'- cCACG-GUGGUggGCCAgagccUGAUCAUCACGc -3'
miRNA:   3'- -GUGCgCGCCG--UGGU-----ACUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 118397 0.68 0.92081
Target:  5'- cCAC-CG-GGCGuuGUGGUCGUCGCGUc -3'
miRNA:   3'- -GUGcGCgCCGUggUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 112085 0.68 0.931307
Target:  5'- cCACGgGCucgGGCGCCAaGAUCAgcgGCGUg -3'
miRNA:   3'- -GUGCgCG---CCGUGGUaCUAGUag-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 200334 0.74 0.663316
Target:  5'- uGCGCuGCGGCGCCGUGGcgCGcCGCGg -3'
miRNA:   3'- gUGCG-CGCCGUGGUACUa-GUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 166691 0.71 0.817829
Target:  5'- gGCGCGCcacgucguccugcacGGCGcCCAUGggCGUCGCGc -3'
miRNA:   3'- gUGCGCG---------------CCGU-GGUACuaGUAGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.