miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 114046 0.66 0.970342
Target:  5'- cCACGCGCaGCGCCAgggccugccgGA-CuUCACGUc -3'
miRNA:   3'- -GUGCGCGcCGUGGUa---------CUaGuAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 163057 0.66 0.973091
Target:  5'- cUACGUGCGGCACUacGUGAagAgcCACGc -3'
miRNA:   3'- -GUGCGCGCCGUGG--UACUagUa-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 91028 0.66 0.973091
Target:  5'- gCGCGUGCGccGCACCGUG-UCG--GCGUg -3'
miRNA:   3'- -GUGCGCGC--CGUGGUACuAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 150364 0.66 0.967397
Target:  5'- uGCGUGCGG-ACCGUGGUCGacugcuacUgGCGa -3'
miRNA:   3'- gUGCGCGCCgUGGUACUAGU--------AgUGCa -5'
14520 3' -54.8 NC_003521.1 + 137614 0.66 0.980231
Target:  5'- cCGCGCGCuGGaCGCCuaccgcucGcgCAUCGCGg -3'
miRNA:   3'- -GUGCGCG-CC-GUGGua------CuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 172109 0.66 0.967092
Target:  5'- uGCGgGCGGCcgacggcGCCAcggucaUGAguUCGUCGCGg -3'
miRNA:   3'- gUGCgCGCCG-------UGGU------ACU--AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 212079 0.66 0.970342
Target:  5'- --gGCGCGGC-CCGcGcgCGUCugGUu -3'
miRNA:   3'- gugCGCGCCGuGGUaCuaGUAGugCA- -5'
14520 3' -54.8 NC_003521.1 + 145589 0.66 0.970342
Target:  5'- gCACGaCGCGGCGgCCGUGG-CcUCGCu- -3'
miRNA:   3'- -GUGC-GCGCCGU-GGUACUaGuAGUGca -5'
14520 3' -54.8 NC_003521.1 + 64768 0.66 0.967397
Target:  5'- --gGCGCGGCACCGggcGAUCccaaGCGc -3'
miRNA:   3'- gugCGCGCCGUGGUa--CUAGuag-UGCa -5'
14520 3' -54.8 NC_003521.1 + 210163 0.66 0.970342
Target:  5'- uCGCGCGgaaaauaGGCGCCAUGAcgagCAggCGCGc -3'
miRNA:   3'- -GUGCGCg------CCGUGGUACUa---GUa-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 110526 0.66 0.980231
Target:  5'- gAUGCGCGGCGCCGcGG-CcUCGCc- -3'
miRNA:   3'- gUGCGCGCCGUGGUaCUaGuAGUGca -5'
14520 3' -54.8 NC_003521.1 + 139598 0.66 0.970342
Target:  5'- gGCGcCGCGGCACCAgGAa---CACGg -3'
miRNA:   3'- gUGC-GCGCCGUGGUaCUaguaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 168084 0.66 0.977568
Target:  5'- --aGCGCGGCACCAccGGUCGgaugcccuccaaCACGc -3'
miRNA:   3'- gugCGCGCCGUGGUa-CUAGUa-----------GUGCa -5'
14520 3' -54.8 NC_003521.1 + 61439 0.66 0.978029
Target:  5'- aGCGaGCGGCugCA-GGUCAUC-CGc -3'
miRNA:   3'- gUGCgCGCCGugGUaCUAGUAGuGCa -5'
14520 3' -54.8 NC_003521.1 + 118212 0.66 0.980231
Target:  5'- aGCGCGCGGCcGCCgccgucgccgggGUGGUCAaugccucgugUCGgGUg -3'
miRNA:   3'- gUGCGCGCCG-UGG------------UACUAGU----------AGUgCA- -5'
14520 3' -54.8 NC_003521.1 + 172224 0.66 0.978029
Target:  5'- aCGgGgGUGGCACCGuguaUGAUCAUauuGCGg -3'
miRNA:   3'- -GUgCgCGCCGUGGU----ACUAGUAg--UGCa -5'
14520 3' -54.8 NC_003521.1 + 225504 0.66 0.980018
Target:  5'- aGCGCGCugaucacccgcucGGCGCCGUcGcgCGUCgACGa -3'
miRNA:   3'- gUGCGCG-------------CCGUGGUA-CuaGUAG-UGCa -5'
14520 3' -54.8 NC_003521.1 + 127277 0.66 0.970342
Target:  5'- cCAgGCGCGGCacguccgacacGCCGUGGUgG-CGCGc -3'
miRNA:   3'- -GUgCGCGCCG-----------UGGUACUAgUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 163010 0.66 0.970342
Target:  5'- aGCGCGCuGCucACCAUGAUCu--GCGa -3'
miRNA:   3'- gUGCGCGcCG--UGGUACUAGuagUGCa -5'
14520 3' -54.8 NC_003521.1 + 90854 0.66 0.973091
Target:  5'- gCAUGCGCGGCACaGUGc-CAaCGCGa -3'
miRNA:   3'- -GUGCGCGCCGUGgUACuaGUaGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.