Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 3' | -54.8 | NC_003521.1 | + | 77 | 0.67 | 0.964251 |
Target: 5'- gGCGUGCGGCggGCCGgccGGUCGg-ACGUg -3' miRNA: 3'- gUGCGCGCCG--UGGUa--CUAGUagUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 2476 | 0.68 | 0.931307 |
Target: 5'- gUACGCGaCGGCGCCGgccagcUGAauuucUUAUUACGUc -3' miRNA: 3'- -GUGCGC-GCCGUGGU------ACU-----AGUAGUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 14495 | 0.67 | 0.957334 |
Target: 5'- gGCGCGC-GCACCAUGcaCAUCuuGUu -3' miRNA: 3'- gUGCGCGcCGUGGUACuaGUAGugCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 15310 | 0.76 | 0.583211 |
Target: 5'- aCGCGCGaCGGCGCCGagcgggUGAUCAgCGCGc -3' miRNA: 3'- -GUGCGC-GCCGUGGU------ACUAGUaGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 19457 | 0.68 | 0.945333 |
Target: 5'- gGCGCgGCGGgACCAUG-UCGcugCGCGg -3' miRNA: 3'- gUGCG-CGCCgUGGUACuAGUa--GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 20645 | 0.66 | 0.974138 |
Target: 5'- cCGCGCGCuggugGGCGCCuacGUGAugaccguggcgcuguUCAUCACc- -3' miRNA: 3'- -GUGCGCG-----CCGUGG---UACU---------------AGUAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 27209 | 0.69 | 0.88859 |
Target: 5'- -cUGCGCGGCgACCGccaccccaacagccUGGUCAUCGCc- -3' miRNA: 3'- guGCGCGCCG-UGGU--------------ACUAGUAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 29263 | 0.67 | 0.960898 |
Target: 5'- aGCGUGCGGCGCUAcuggcuguacGGUUAUCcCGUg -3' miRNA: 3'- gUGCGCGCCGUGGUa---------CUAGUAGuGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 34698 | 0.71 | 0.838457 |
Target: 5'- uGCGCGUcguaggcgaagacGGCGCCGUGcgCGUcCACGa -3' miRNA: 3'- gUGCGCG-------------CCGUGGUACuaGUA-GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 36799 | 0.7 | 0.862462 |
Target: 5'- gACGCGCcuuucgGGCagGCCGUGAUCA-CGCGc -3' miRNA: 3'- gUGCGCG------CCG--UGGUACUAGUaGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 37466 | 0.71 | 0.826208 |
Target: 5'- uCGCGCGCGGgcCACCGUGGUgccgcagggcaccccCAUCGCc- -3' miRNA: 3'- -GUGCGCGCC--GUGGUACUA---------------GUAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 41636 | 0.73 | 0.741819 |
Target: 5'- gGgGCGUGGCGcCCGUGGUCAUgAUGa -3' miRNA: 3'- gUgCGCGCCGU-GGUACUAGUAgUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 45351 | 0.72 | 0.751309 |
Target: 5'- gACGUGgaaCGGCGacCCAUGGUCGUUACGUc -3' miRNA: 3'- gUGCGC---GCCGU--GGUACUAGUAGUGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 54025 | 0.66 | 0.976624 |
Target: 5'- cCACGcCGUGGCGCCugaaAcauguggacugcgguUGGUCGUCGCa- -3' miRNA: 3'- -GUGC-GCGCCGUGG----U---------------ACUAGUAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 55624 | 0.69 | 0.897076 |
Target: 5'- -cCGCGCGGCccacACCGaGggCGUCACGc -3' miRNA: 3'- guGCGCGCCG----UGGUaCuaGUAGUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 57157 | 0.72 | 0.779137 |
Target: 5'- cCACGCGCGGCA----GGUCGUCgGCGUg -3' miRNA: 3'- -GUGCGCGCCGUgguaCUAGUAG-UGCA- -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 58827 | 0.73 | 0.732238 |
Target: 5'- aGCGCGUGGCgGCCGUGA-CGUUACu- -3' miRNA: 3'- gUGCGCGCCG-UGGUACUaGUAGUGca -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 60607 | 0.71 | 0.825378 |
Target: 5'- aCACGCGCGGCACCAccaacgccgagCGCGa -3' miRNA: 3'- -GUGCGCGCCGUGGUacuagua----GUGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 61439 | 0.66 | 0.978029 |
Target: 5'- aGCGaGCGGCugCA-GGUCAUC-CGc -3' miRNA: 3'- gUGCgCGCCGugGUaCUAGUAGuGCa -5' |
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14520 | 3' | -54.8 | NC_003521.1 | + | 62502 | 0.71 | 0.822876 |
Target: 5'- uCGCuaGCacGCGCCGUGAUCAUCACc- -3' miRNA: 3'- -GUGcgCGc-CGUGGUACUAGUAGUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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