miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 77 0.67 0.964251
Target:  5'- gGCGUGCGGCggGCCGgccGGUCGg-ACGUg -3'
miRNA:   3'- gUGCGCGCCG--UGGUa--CUAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 2476 0.68 0.931307
Target:  5'- gUACGCGaCGGCGCCGgccagcUGAauuucUUAUUACGUc -3'
miRNA:   3'- -GUGCGC-GCCGUGGU------ACU-----AGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 14495 0.67 0.957334
Target:  5'- gGCGCGC-GCACCAUGcaCAUCuuGUu -3'
miRNA:   3'- gUGCGCGcCGUGGUACuaGUAGugCA- -5'
14520 3' -54.8 NC_003521.1 + 15310 0.76 0.583211
Target:  5'- aCGCGCGaCGGCGCCGagcgggUGAUCAgCGCGc -3'
miRNA:   3'- -GUGCGC-GCCGUGGU------ACUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 19457 0.68 0.945333
Target:  5'- gGCGCgGCGGgACCAUG-UCGcugCGCGg -3'
miRNA:   3'- gUGCG-CGCCgUGGUACuAGUa--GUGCa -5'
14520 3' -54.8 NC_003521.1 + 20645 0.66 0.974138
Target:  5'- cCGCGCGCuggugGGCGCCuacGUGAugaccguggcgcuguUCAUCACc- -3'
miRNA:   3'- -GUGCGCG-----CCGUGG---UACU---------------AGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 27209 0.69 0.88859
Target:  5'- -cUGCGCGGCgACCGccaccccaacagccUGGUCAUCGCc- -3'
miRNA:   3'- guGCGCGCCG-UGGU--------------ACUAGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 29263 0.67 0.960898
Target:  5'- aGCGUGCGGCGCUAcuggcuguacGGUUAUCcCGUg -3'
miRNA:   3'- gUGCGCGCCGUGGUa---------CUAGUAGuGCA- -5'
14520 3' -54.8 NC_003521.1 + 34698 0.71 0.838457
Target:  5'- uGCGCGUcguaggcgaagacGGCGCCGUGcgCGUcCACGa -3'
miRNA:   3'- gUGCGCG-------------CCGUGGUACuaGUA-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 36799 0.7 0.862462
Target:  5'- gACGCGCcuuucgGGCagGCCGUGAUCA-CGCGc -3'
miRNA:   3'- gUGCGCG------CCG--UGGUACUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 37466 0.71 0.826208
Target:  5'- uCGCGCGCGGgcCACCGUGGUgccgcagggcaccccCAUCGCc- -3'
miRNA:   3'- -GUGCGCGCC--GUGGUACUA---------------GUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 41636 0.73 0.741819
Target:  5'- gGgGCGUGGCGcCCGUGGUCAUgAUGa -3'
miRNA:   3'- gUgCGCGCCGU-GGUACUAGUAgUGCa -5'
14520 3' -54.8 NC_003521.1 + 45351 0.72 0.751309
Target:  5'- gACGUGgaaCGGCGacCCAUGGUCGUUACGUc -3'
miRNA:   3'- gUGCGC---GCCGU--GGUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 54025 0.66 0.976624
Target:  5'- cCACGcCGUGGCGCCugaaAcauguggacugcgguUGGUCGUCGCa- -3'
miRNA:   3'- -GUGC-GCGCCGUGG----U---------------ACUAGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 55624 0.69 0.897076
Target:  5'- -cCGCGCGGCccacACCGaGggCGUCACGc -3'
miRNA:   3'- guGCGCGCCG----UGGUaCuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 57157 0.72 0.779137
Target:  5'- cCACGCGCGGCA----GGUCGUCgGCGUg -3'
miRNA:   3'- -GUGCGCGCCGUgguaCUAGUAG-UGCA- -5'
14520 3' -54.8 NC_003521.1 + 58827 0.73 0.732238
Target:  5'- aGCGCGUGGCgGCCGUGA-CGUUACu- -3'
miRNA:   3'- gUGCGCGCCG-UGGUACUaGUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 60607 0.71 0.825378
Target:  5'- aCACGCGCGGCACCAccaacgccgagCGCGa -3'
miRNA:   3'- -GUGCGCGCCGUGGUacuagua----GUGCa -5'
14520 3' -54.8 NC_003521.1 + 61439 0.66 0.978029
Target:  5'- aGCGaGCGGCugCA-GGUCAUC-CGc -3'
miRNA:   3'- gUGCgCGCCGugGUaCUAGUAGuGCa -5'
14520 3' -54.8 NC_003521.1 + 62502 0.71 0.822876
Target:  5'- uCGCuaGCacGCGCCGUGAUCAUCACc- -3'
miRNA:   3'- -GUGcgCGc-CGUGGUACUAGUAGUGca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.