miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 240626 0.67 0.964251
Target:  5'- gGCGUGCGGCggGCCGgccGGUCGg-ACGUg -3'
miRNA:   3'- gUGCGCGCCG--UGGUa--CUAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 228714 0.72 0.760697
Target:  5'- aGCGCgGCGGCGgCAUGAUUAUaCACa- -3'
miRNA:   3'- gUGCG-CGCCGUgGUACUAGUA-GUGca -5'
14520 3' -54.8 NC_003521.1 + 225504 0.66 0.980018
Target:  5'- aGCGCGCugaucacccgcucGGCGCCGUcGcgCGUCgACGa -3'
miRNA:   3'- gUGCGCG-------------CCGUGGUA-CuaGUAG-UGCa -5'
14520 3' -54.8 NC_003521.1 + 224687 0.68 0.926173
Target:  5'- cUugGCGUGGCGCCcgGG-CGuguggaaguUCACGUc -3'
miRNA:   3'- -GugCGCGCCGUGGuaCUaGU---------AGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 221910 0.7 0.869804
Target:  5'- gGCGCGCGGCGCCAcccuUCGgggcugcCGCGg -3'
miRNA:   3'- gUGCGCGCCGUGGUacu-AGUa------GUGCa -5'
14520 3' -54.8 NC_003521.1 + 220195 0.68 0.931307
Target:  5'- aGCGCGCGGCuCUccGAgcaCAUCugGa -3'
miRNA:   3'- gUGCGCGCCGuGGuaCUa--GUAGugCa -5'
14520 3' -54.8 NC_003521.1 + 220145 0.66 0.975404
Target:  5'- gGCcCGUGaaggugaugaacaGCGCCAcGGUCAUCACGUa -3'
miRNA:   3'- gUGcGCGC-------------CGUGGUaCUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 218033 0.66 0.975652
Target:  5'- uCACGCGCGGauaGCUA----CGUCACGa -3'
miRNA:   3'- -GUGCGCGCCg--UGGUacuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 212079 0.66 0.970342
Target:  5'- --gGCGCGGC-CCGcGcgCGUCugGUu -3'
miRNA:   3'- gugCGCGCCGuGGUaCuaGUAGugCA- -5'
14520 3' -54.8 NC_003521.1 + 210163 0.66 0.970342
Target:  5'- uCGCGCGgaaaauaGGCGCCAUGAcgagCAggCGCGc -3'
miRNA:   3'- -GUGCGCg------CCGUGGUACUa---GUa-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 207599 0.66 0.978029
Target:  5'- aACGC-CGGCugCAaGAUcCGUCugGg -3'
miRNA:   3'- gUGCGcGCCGugGUaCUA-GUAGugCa -5'
14520 3' -54.8 NC_003521.1 + 205376 0.69 0.897076
Target:  5'- -cUGCGCGGCAUgAUGGacUAUCACGa -3'
miRNA:   3'- guGCGCGCCGUGgUACUa-GUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 204116 0.67 0.964251
Target:  5'- gGCGUGCGGCACgAaGGgcacCAUCACc- -3'
miRNA:   3'- gUGCGCGCCGUGgUaCUa---GUAGUGca -5'
14520 3' -54.8 NC_003521.1 + 203697 0.69 0.915217
Target:  5'- -cCGCGCGGCauguugcgcGCCGUGAUCuuGUC-CGa -3'
miRNA:   3'- guGCGCGCCG---------UGGUACUAG--UAGuGCa -5'
14520 3' -54.8 NC_003521.1 + 200334 0.74 0.663316
Target:  5'- uGCGCuGCGGCGCCGUGGcgCGcCGCGg -3'
miRNA:   3'- gUGCG-CGCCGUGGUACUa-GUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 200305 0.67 0.964251
Target:  5'- gGCGUGCGGCggGCCGgccGGUCGg-ACGUg -3'
miRNA:   3'- gUGCGCGCCG--UGGUa--CUAGUagUGCA- -5'
14520 3' -54.8 NC_003521.1 + 197482 0.68 0.945333
Target:  5'- uCACGCGCGGCggGCCG-GA-CggCGCGg -3'
miRNA:   3'- -GUGCGCGCCG--UGGUaCUaGuaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 195600 0.66 0.970342
Target:  5'- -cCGgGCGGC-CCuucGAUCAUCAUGc -3'
miRNA:   3'- guGCgCGCCGuGGua-CUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 192320 0.69 0.897076
Target:  5'- gGCGUcgGCGGCACCGUGGguacCGUCAg-- -3'
miRNA:   3'- gUGCG--CGCCGUGGUACUa---GUAGUgca -5'
14520 3' -54.8 NC_003521.1 + 191703 0.7 0.862462
Target:  5'- cCGCaGCaGCGGCGCCGcGGUCAcCACGc -3'
miRNA:   3'- -GUG-CG-CGCCGUGGUaCUAGUaGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.