miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 3' -54.8 NC_003521.1 + 188741 0.67 0.953554
Target:  5'- --aGCGCGGCcCuCAUGGUgGUCGCuGUa -3'
miRNA:   3'- gugCGCGCCGuG-GUACUAgUAGUG-CA- -5'
14520 3' -54.8 NC_003521.1 + 184497 0.67 0.953164
Target:  5'- -cUGCGCGGCcgcGCCucgGUGGUCuucauccAUCACGUg -3'
miRNA:   3'- guGCGCGCCG---UGG---UACUAG-------UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 178937 0.69 0.911752
Target:  5'- aACG-GCGGCAUCugcucgcuauccgugGUGGUCGUCAUGg -3'
miRNA:   3'- gUGCgCGCCGUGG---------------UACUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 172224 0.66 0.978029
Target:  5'- aCGgGgGUGGCACCGuguaUGAUCAUauuGCGg -3'
miRNA:   3'- -GUgCgCGCCGUGGU----ACUAGUAg--UGCa -5'
14520 3' -54.8 NC_003521.1 + 172109 0.66 0.967092
Target:  5'- uGCGgGCGGCcgacggcGCCAcggucaUGAguUCGUCGCGg -3'
miRNA:   3'- gUGCgCGCCG-------UGGU------ACU--AGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 170484 0.7 0.854919
Target:  5'- --aGCGCGGCgAUCGcgaaGAUCGUCACGa -3'
miRNA:   3'- gugCGCGCCG-UGGUa---CUAGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 168084 0.66 0.977568
Target:  5'- --aGCGCGGCACCAccGGUCGgaugcccuccaaCACGc -3'
miRNA:   3'- gugCGCGCCGUGGUa-CUAGUa-----------GUGCa -5'
14520 3' -54.8 NC_003521.1 + 167605 0.68 0.926174
Target:  5'- gGCGCGCagaGGCGCCGcaggcgcucggGGUCgGUCACGUc -3'
miRNA:   3'- gUGCGCG---CCGUGGUa----------CUAG-UAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 166691 0.71 0.817829
Target:  5'- gGCGCGCcacgucguccugcacGGCGcCCAUGggCGUCGCGc -3'
miRNA:   3'- gUGCGCG---------------CCGU-GGUACuaGUAGUGCa -5'
14520 3' -54.8 NC_003521.1 + 166282 0.67 0.964251
Target:  5'- gCACgGCGCGGCugguCCGcgUGGccUCGUUGCGUa -3'
miRNA:   3'- -GUG-CGCGCCGu---GGU--ACU--AGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 165663 0.7 0.883869
Target:  5'- -cCGCGCGGCACCAUG--CGUC-Ca- -3'
miRNA:   3'- guGCGCGCCGUGGUACuaGUAGuGca -5'
14520 3' -54.8 NC_003521.1 + 163057 0.66 0.973091
Target:  5'- cUACGUGCGGCACUacGUGAagAgcCACGc -3'
miRNA:   3'- -GUGCGCGCCGUGG--UACUagUa-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 163010 0.66 0.970342
Target:  5'- aGCGCGCuGCucACCAUGAUCu--GCGa -3'
miRNA:   3'- gUGCGCGcCG--UGGUACUAGuagUGCa -5'
14520 3' -54.8 NC_003521.1 + 155616 0.68 0.940428
Target:  5'- --gGCGCGGCGCCGggUGAcgcagugUCGUaCGCGa -3'
miRNA:   3'- gugCGCGCCGUGGU--ACU-------AGUA-GUGCa -5'
14520 3' -54.8 NC_003521.1 + 154538 0.67 0.964251
Target:  5'- uGCGUGaucacCGGCACCAcggUGAUCGcCGCGc -3'
miRNA:   3'- gUGCGC-----GCCGUGGU---ACUAGUaGUGCa -5'
14520 3' -54.8 NC_003521.1 + 152236 1.06 0.008909
Target:  5'- uCACGCGCGGCACCAUGAUCAUCACGUu -3'
miRNA:   3'- -GUGCGCGCCGUGGUACUAGUAGUGCA- -5'
14520 3' -54.8 NC_003521.1 + 152055 0.66 0.980231
Target:  5'- aCACGCGgGGUAUCGUGGacuucUCGgaggacCACGg -3'
miRNA:   3'- -GUGCGCgCCGUGGUACU-----AGUa-----GUGCa -5'
14520 3' -54.8 NC_003521.1 + 151302 0.66 0.975652
Target:  5'- gACGCGCGGUuuagguauguaaACCGUGGgguuUCugGg -3'
miRNA:   3'- gUGCGCGCCG------------UGGUACUagu-AGugCa -5'
14520 3' -54.8 NC_003521.1 + 150364 0.66 0.967397
Target:  5'- uGCGUGCGG-ACCGUGGUCGacugcuacUgGCGa -3'
miRNA:   3'- gUGCGCGCCgUGGUACUAGU--------AgUGCa -5'
14520 3' -54.8 NC_003521.1 + 150033 0.69 0.897076
Target:  5'- gCACGUGCGcgacgccacgcuGCACCGggUGGUCAUCGuCGa -3'
miRNA:   3'- -GUGCGCGC------------CGUGGU--ACUAGUAGU-GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.