miRNA display CGI


Results 61 - 80 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 87575 0.67 0.743369
Target:  5'- -gACGGGCaggCgGGUGCGCaCGCGGAc -3'
miRNA:   3'- caUGCCUGga-GgUCGUGCG-GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 144900 0.67 0.743369
Target:  5'- cUGCGGGCC-CaCGGCAUGCCgGUGGc- -3'
miRNA:   3'- cAUGCCUGGaG-GUCGUGCGG-CGCCua -5'
14520 5' -60.3 NC_003521.1 + 185362 0.67 0.743368
Target:  5'- -gGCGGcgcaguGCCucuUCCAGCGCGCCGCccaGAUc -3'
miRNA:   3'- caUGCC------UGG---AGGUCGUGCGGCGc--CUA- -5'
14520 5' -60.3 NC_003521.1 + 124033 0.67 0.743368
Target:  5'- -cGCGG-CCguagacggCCAGCGUGCCGCGGc- -3'
miRNA:   3'- caUGCCuGGa-------GGUCGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 125886 0.67 0.740596
Target:  5'- cGUACGGGuCCacgcCCAGCAUGCacgaggcccggccgCGCGGGUu -3'
miRNA:   3'- -CAUGCCU-GGa---GGUCGUGCG--------------GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 216549 0.67 0.734095
Target:  5'- -gAUGGACCugccgagggaaUCCAGguCGCCGCcGAUa -3'
miRNA:   3'- caUGCCUGG-----------AGGUCguGCGGCGcCUA- -5'
14520 5' -60.3 NC_003521.1 + 35806 0.68 0.723803
Target:  5'- --uCGGGCgUCgCGGCACGCCgucguuaGCGGGUc -3'
miRNA:   3'- cauGCCUGgAG-GUCGUGCGG-------CGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 210592 0.68 0.721921
Target:  5'- -cGCGGACCUgCAGCGCgacgccaacggccgGCCGaucuCGGAg -3'
miRNA:   3'- caUGCCUGGAgGUCGUG--------------CGGC----GCCUa -5'
14520 5' -60.3 NC_003521.1 + 73224 0.68 0.715317
Target:  5'- cUGCGGcGCCUCU-GCGCGCCGCu--- -3'
miRNA:   3'- cAUGCC-UGGAGGuCGUGCGGCGccua -5'
14520 5' -60.3 NC_003521.1 + 226468 0.68 0.715317
Target:  5'- --gUGGGCCaCCAGCACcagguacugGUCGCGGGUg -3'
miRNA:   3'- cauGCCUGGaGGUCGUG---------CGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 35056 0.68 0.715316
Target:  5'- gGUugGuACUUCCAGCGgGCCauGCGGGa -3'
miRNA:   3'- -CAugCcUGGAGGUCGUgCGG--CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 166635 0.68 0.715316
Target:  5'- cGU-CGGGCCgcgcgCCGG-GCGCCGCGGc- -3'
miRNA:   3'- -CAuGCCUGGa----GGUCgUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 226870 0.68 0.705827
Target:  5'- ---aGGGCgUCCAGCGagggcaGCUGCGGGg -3'
miRNA:   3'- caugCCUGgAGGUCGUg-----CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 192215 0.68 0.705827
Target:  5'- -gGCGGACCcuguuUCUuGCgacccgGCGCCGCGGGa -3'
miRNA:   3'- caUGCCUGG-----AGGuCG------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 131057 0.68 0.705827
Target:  5'- -gGCGGGCCUCUGGaCGCGguggcggcgaCCGCGGc- -3'
miRNA:   3'- caUGCCUGGAGGUC-GUGC----------GGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 70732 0.68 0.705827
Target:  5'- uGUAcCGGcACUUCguccagcugCAGCGCGCCGCGGc- -3'
miRNA:   3'- -CAU-GCC-UGGAG---------GUCGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 137278 0.68 0.696281
Target:  5'- -cGgGGGCC-CCAGCGaccuggaGCUGCGGGUg -3'
miRNA:   3'- caUgCCUGGaGGUCGUg------CGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 166544 0.68 0.686687
Target:  5'- aUGCGGAUguugCCGGCGCaCUGCGGAUc -3'
miRNA:   3'- cAUGCCUGga--GGUCGUGcGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 196862 0.68 0.677052
Target:  5'- -cACGuccACCUCCAGCaACGgcaCCGCGGGUg -3'
miRNA:   3'- caUGCc--UGGAGGUCG-UGC---GGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 91195 0.68 0.677052
Target:  5'- -aGCGGuACCgCgGGCGCGUCGUGGGc -3'
miRNA:   3'- caUGCC-UGGaGgUCGUGCGGCGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.