miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 88776 0.67 0.779503
Target:  5'- -gACGGACCUgCgggugaAGCAcCGCUGCGGc- -3'
miRNA:   3'- caUGCCUGGAgG------UCGU-GCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 103467 0.67 0.779503
Target:  5'- -cGCGGAUgcgggagggcggCUCCAGCGgGCCcGCGuGAUa -3'
miRNA:   3'- caUGCCUG------------GAGGUCGUgCGG-CGC-CUA- -5'
14520 5' -60.3 NC_003521.1 + 184209 0.67 0.779503
Target:  5'- --gUGGACCUCUGGgACGUgGCGGc- -3'
miRNA:   3'- cauGCCUGGAGGUCgUGCGgCGCCua -5'
14520 5' -60.3 NC_003521.1 + 150664 0.67 0.778622
Target:  5'- -gGCGGcUCUCCGGCggcgGCGCCGCugcugcuGGGUg -3'
miRNA:   3'- caUGCCuGGAGGUCG----UGCGGCG-------CCUA- -5'
14520 5' -60.3 NC_003521.1 + 18659 0.67 0.778621
Target:  5'- -cACGGACCUgCUGGCcacggggGCGCUGCaGGAc -3'
miRNA:   3'- caUGCCUGGA-GGUCG-------UGCGGCG-CCUa -5'
14520 5' -60.3 NC_003521.1 + 221899 0.67 0.77063
Target:  5'- -gGCGGAUUgCCGGCGCGCgGCGc-- -3'
miRNA:   3'- caUGCCUGGaGGUCGUGCGgCGCcua -5'
14520 5' -60.3 NC_003521.1 + 143918 0.67 0.77063
Target:  5'- -gACGGGCa--CGGCGCGCCGCa--- -3'
miRNA:   3'- caUGCCUGgagGUCGUGCGGCGccua -5'
14520 5' -60.3 NC_003521.1 + 135917 0.67 0.77063
Target:  5'- uGUGCcGGCCUCgGcCACgGCCGCGGGa -3'
miRNA:   3'- -CAUGcCUGGAGgUcGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 91792 0.67 0.770629
Target:  5'- -cACGG-CCUCgAGaaucucCACGCCGUGGGg -3'
miRNA:   3'- caUGCCuGGAGgUC------GUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 186299 0.67 0.770629
Target:  5'- --cCGGGCC-CCAGCgGCGCCGUGcaGAUc -3'
miRNA:   3'- cauGCCUGGaGGUCG-UGCGGCGC--CUA- -5'
14520 5' -60.3 NC_003521.1 + 150486 0.67 0.769736
Target:  5'- gGUGgGGcCCUUCAGCuuuuacgGCGCCgGCGGGg -3'
miRNA:   3'- -CAUgCCuGGAGGUCG-------UGCGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 91522 0.67 0.76525
Target:  5'- -gGCGGccgcgucgucGCgCUCCAGCACGUacuugugggcgccgaCGCGGAa -3'
miRNA:   3'- caUGCC----------UG-GAGGUCGUGCG---------------GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 127282 0.67 0.761644
Target:  5'- -cGCGGcACgUCCGaCACGCCGUGGu- -3'
miRNA:   3'- caUGCC-UGgAGGUcGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 188466 0.67 0.761643
Target:  5'- -gACGcGCCUCCgagcuacgAGCAgGCCGUGGGc -3'
miRNA:   3'- caUGCcUGGAGG--------UCGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 104679 0.67 0.752554
Target:  5'- -cGCGGAgCUCgAGgGgGCCGUGGGc -3'
miRNA:   3'- caUGCCUgGAGgUCgUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 111272 0.67 0.752554
Target:  5'- cGU-CGGGCCcgccgugCCAGCGcCGCCGCGa-- -3'
miRNA:   3'- -CAuGCCUGGa------GGUCGU-GCGGCGCcua -5'
14520 5' -60.3 NC_003521.1 + 136698 0.67 0.752554
Target:  5'- -gGCGGGCC-CgAGCaggACGCCGCcgaGGAUg -3'
miRNA:   3'- caUGCCUGGaGgUCG---UGCGGCG---CCUA- -5'
14520 5' -60.3 NC_003521.1 + 215423 0.67 0.752554
Target:  5'- -gGCGaGcCCUCCgugaAGCAgaGCCGCGGGUg -3'
miRNA:   3'- caUGC-CuGGAGG----UCGUg-CGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 162366 0.67 0.752554
Target:  5'- --cCGGGCCgcguucCCAGcCGCGCCGaagaGGAUg -3'
miRNA:   3'- cauGCCUGGa-----GGUC-GUGCGGCg---CCUA- -5'
14520 5' -60.3 NC_003521.1 + 61832 0.67 0.752554
Target:  5'- -gAgGGGCC-CUgggAGgGCGCCGCGGAa -3'
miRNA:   3'- caUgCCUGGaGG---UCgUGCGGCGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.