Results 41 - 60 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 5' | -60.3 | NC_003521.1 | + | 114924 | 0.69 | 0.667383 |
Target: 5'- cGgcCGGGCCUCguGCAUGCugggCGUGGAc -3' miRNA: 3'- -CauGCCUGGAGguCGUGCG----GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 196862 | 0.68 | 0.677052 |
Target: 5'- -cACGuccACCUCCAGCaACGgcaCCGCGGGUg -3' miRNA: 3'- caUGCc--UGGAGGUCG-UGC---GGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 91195 | 0.68 | 0.677052 |
Target: 5'- -aGCGGuACCgCgGGCGCGUCGUGGGc -3' miRNA: 3'- caUGCC-UGGaGgUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 166544 | 0.68 | 0.686687 |
Target: 5'- aUGCGGAUguugCCGGCGCaCUGCGGAUc -3' miRNA: 3'- cAUGCCUGga--GGUCGUGcGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 137278 | 0.68 | 0.696281 |
Target: 5'- -cGgGGGCC-CCAGCGaccuggaGCUGCGGGUg -3' miRNA: 3'- caUgCCUGGaGGUCGUg------CGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 131057 | 0.68 | 0.705827 |
Target: 5'- -gGCGGGCCUCUGGaCGCGguggcggcgaCCGCGGc- -3' miRNA: 3'- caUGCCUGGAGGUC-GUGC----------GGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 70732 | 0.68 | 0.705827 |
Target: 5'- uGUAcCGGcACUUCguccagcugCAGCGCGCCGCGGc- -3' miRNA: 3'- -CAU-GCC-UGGAG---------GUCGUGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 226870 | 0.68 | 0.705827 |
Target: 5'- ---aGGGCgUCCAGCGagggcaGCUGCGGGg -3' miRNA: 3'- caugCCUGgAGGUCGUg-----CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 192215 | 0.68 | 0.705827 |
Target: 5'- -gGCGGACCcuguuUCUuGCgacccgGCGCCGCGGGa -3' miRNA: 3'- caUGCCUGG-----AGGuCG------UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 166635 | 0.68 | 0.715316 |
Target: 5'- cGU-CGGGCCgcgcgCCGG-GCGCCGCGGc- -3' miRNA: 3'- -CAuGCCUGGa----GGUCgUGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 35056 | 0.68 | 0.715316 |
Target: 5'- gGUugGuACUUCCAGCGgGCCauGCGGGa -3' miRNA: 3'- -CAugCcUGGAGGUCGUgCGG--CGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 73224 | 0.68 | 0.715317 |
Target: 5'- cUGCGGcGCCUCU-GCGCGCCGCu--- -3' miRNA: 3'- cAUGCC-UGGAGGuCGUGCGGCGccua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 226468 | 0.68 | 0.715317 |
Target: 5'- --gUGGGCCaCCAGCACcagguacugGUCGCGGGUg -3' miRNA: 3'- cauGCCUGGaGGUCGUG---------CGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 210592 | 0.68 | 0.721921 |
Target: 5'- -cGCGGACCUgCAGCGCgacgccaacggccgGCCGaucuCGGAg -3' miRNA: 3'- caUGCCUGGAgGUCGUG--------------CGGC----GCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 35806 | 0.68 | 0.723803 |
Target: 5'- --uCGGGCgUCgCGGCACGCCgucguuaGCGGGUc -3' miRNA: 3'- cauGCCUGgAG-GUCGUGCGG-------CGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 216549 | 0.67 | 0.734095 |
Target: 5'- -gAUGGACCugccgagggaaUCCAGguCGCCGCcGAUa -3' miRNA: 3'- caUGCCUGG-----------AGGUCguGCGGCGcCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 125886 | 0.67 | 0.740596 |
Target: 5'- cGUACGGGuCCacgcCCAGCAUGCacgaggcccggccgCGCGGGUu -3' miRNA: 3'- -CAUGCCU-GGa---GGUCGUGCG--------------GCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 185362 | 0.67 | 0.743368 |
Target: 5'- -gGCGGcgcaguGCCucuUCCAGCGCGCCGCccaGAUc -3' miRNA: 3'- caUGCC------UGG---AGGUCGUGCGGCGc--CUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 124033 | 0.67 | 0.743368 |
Target: 5'- -cGCGG-CCguagacggCCAGCGUGCCGCGGc- -3' miRNA: 3'- caUGCCuGGa-------GGUCGUGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 144900 | 0.67 | 0.743369 |
Target: 5'- cUGCGGGCC-CaCGGCAUGCCgGUGGc- -3' miRNA: 3'- cAUGCCUGGaG-GUCGUGCGG-CGCCua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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