miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 65150 0.72 0.46831
Target:  5'- -aGCGGACCUCgCA-CGgGCCGUGGAg -3'
miRNA:   3'- caUGCCUGGAG-GUcGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 114719 0.72 0.46831
Target:  5'- -gACGaGAUCgaccgcuggaUCCGGCACGCCGUGGGg -3'
miRNA:   3'- caUGC-CUGG----------AGGUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 57433 0.72 0.477235
Target:  5'- -cGCGGACgggCUCCuGCACGCCgcaaaaGCGGAa -3'
miRNA:   3'- caUGCCUG---GAGGuCGUGCGG------CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 179482 0.72 0.495331
Target:  5'- -gACGGguACgCUCCGGCAgCGCCGgGGAa -3'
miRNA:   3'- caUGCC--UG-GAGGUCGU-GCGGCgCCUa -5'
14520 5' -60.3 NC_003521.1 + 78504 0.72 0.495331
Target:  5'- -gACGGGCCgaCCGGaCACGCgaCGCGGAUu -3'
miRNA:   3'- caUGCCUGGa-GGUC-GUGCG--GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 155488 0.71 0.523037
Target:  5'- -cGCcGGCCUgCGGCGgGCCGCGGGc -3'
miRNA:   3'- caUGcCUGGAgGUCGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 13978 0.71 0.541835
Target:  5'- -gAUGGGCCUgcCCGGCGCGgCgGCGGGc -3'
miRNA:   3'- caUGCCUGGA--GGUCGUGC-GgCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 29239 0.71 0.551319
Target:  5'- cUACuGGGCCUCCAGC-CGCgGCGa-- -3'
miRNA:   3'- cAUG-CCUGGAGGUCGuGCGgCGCcua -5'
14520 5' -60.3 NC_003521.1 + 232837 0.71 0.551319
Target:  5'- --cCGGuACCUCCcccGC-CGCCGCGGAc -3'
miRNA:   3'- cauGCC-UGGAGGu--CGuGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 42622 0.7 0.558942
Target:  5'- gGUACGGGCCgcugggaacacgUCAGCA-GCCGCGGu- -3'
miRNA:   3'- -CAUGCCUGGa-----------GGUCGUgCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 139245 0.7 0.589701
Target:  5'- uGUACGGGgCUCCucGCGCGgaGCGGGg -3'
miRNA:   3'- -CAUGCCUgGAGGu-CGUGCggCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 23970 0.69 0.618798
Target:  5'- -cACGGGCCUggaaCAGUcgucCGCCGCGGGc -3'
miRNA:   3'- caUGCCUGGAg---GUCGu---GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 34759 0.69 0.63728
Target:  5'- cGUACGaGACCacgCCGaugagguGCAUGUCGCGGAa -3'
miRNA:   3'- -CAUGC-CUGGa--GGU-------CGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 48610 0.69 0.638252
Target:  5'- cGUGC--ACCgUCAGCACGCaCGCGGAUa -3'
miRNA:   3'- -CAUGccUGGaGGUCGUGCG-GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 171637 0.69 0.647976
Target:  5'- cGU-CGGGuaUgUCUAGCGCGCCGCGGc- -3'
miRNA:   3'- -CAuGCCU--GgAGGUCGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 169440 0.69 0.647976
Target:  5'- -gGCGGuCCUCgaaCAGCGgguCGCCGUGGAc -3'
miRNA:   3'- caUGCCuGGAG---GUCGU---GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 95919 0.69 0.647976
Target:  5'- --uCGG-CCaCCGGCAUGCCGUGGGc -3'
miRNA:   3'- cauGCCuGGaGGUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 119352 0.69 0.657689
Target:  5'- gGUcCGG-CCUCCauGGaCACGCCGgGGAUg -3'
miRNA:   3'- -CAuGCCuGGAGG--UC-GUGCGGCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 198270 0.69 0.657689
Target:  5'- --cCGGACagCCAGCcggGCGUCGCGGAg -3'
miRNA:   3'- cauGCCUGgaGGUCG---UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 43470 0.69 0.657689
Target:  5'- -aGCGGGCCagcgcggcggCCGuGCugGCCGCGGc- -3'
miRNA:   3'- caUGCCUGGa---------GGU-CGugCGGCGCCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.