miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 55126 0.73 0.442066
Target:  5'- -cGCGGACCUCaaauaaGGuCGCGgCGCGGAg -3'
miRNA:   3'- caUGCCUGGAGg-----UC-GUGCgGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 57433 0.72 0.477235
Target:  5'- -cGCGGACgggCUCCuGCACGCCgcaaaaGCGGAa -3'
miRNA:   3'- caUGCCUG---GAGGuCGUGCGG------CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 60274 0.73 0.433504
Target:  5'- -cGCGccACC-CCGGUACGCCGCGGAg -3'
miRNA:   3'- caUGCc-UGGaGGUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 61832 0.67 0.752554
Target:  5'- -gAgGGGCC-CUgggAGgGCGCCGCGGAa -3'
miRNA:   3'- caUgCCUGGaGG---UCgUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 65150 0.72 0.46831
Target:  5'- -aGCGGACCUCgCA-CGgGCCGUGGAg -3'
miRNA:   3'- caUGCCUGGAG-GUcGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 70732 0.68 0.705827
Target:  5'- uGUAcCGGcACUUCguccagcugCAGCGCGCCGCGGc- -3'
miRNA:   3'- -CAU-GCC-UGGAG---------GUCGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 71005 0.66 0.80538
Target:  5'- cGUACGGACUgacgCUGGCugGagaCCGgCGGAg -3'
miRNA:   3'- -CAUGCCUGGa---GGUCGugC---GGC-GCCUa -5'
14520 5' -60.3 NC_003521.1 + 72159 0.66 0.821935
Target:  5'- -cAgGGACCUCCGGC--GCCGuCGGc- -3'
miRNA:   3'- caUgCCUGGAGGUCGugCGGC-GCCua -5'
14520 5' -60.3 NC_003521.1 + 73224 0.68 0.715317
Target:  5'- cUGCGGcGCCUCU-GCGCGCCGCu--- -3'
miRNA:   3'- cAUGCC-UGGAGGuCGUGCGGCGccua -5'
14520 5' -60.3 NC_003521.1 + 73922 0.66 0.796887
Target:  5'- cUGCGGcaguucACCUacCCcGCGCGCCcGCGGAc -3'
miRNA:   3'- cAUGCC------UGGA--GGuCGUGCGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 76205 0.66 0.80538
Target:  5'- -gAUGGGCCagaagcccgCCGGCACGCCcUGGGc -3'
miRNA:   3'- caUGCCUGGa--------GGUCGUGCGGcGCCUa -5'
14520 5' -60.3 NC_003521.1 + 76948 0.74 0.368668
Target:  5'- -cGCGGugCguUCCAGCAUGUCGCGGc- -3'
miRNA:   3'- caUGCCugG--AGGUCGUGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 78504 0.72 0.495331
Target:  5'- -gACGGGCCgaCCGGaCACGCgaCGCGGAUu -3'
miRNA:   3'- caUGCCUGGa-GGUC-GUGCG--GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 82621 0.66 0.813732
Target:  5'- ---aGGAgCUCCAuaCACGCCGcCGGAg -3'
miRNA:   3'- caugCCUgGAGGUc-GUGCGGC-GCCUa -5'
14520 5' -60.3 NC_003521.1 + 82707 0.73 0.442066
Target:  5'- aUGCGGGCCaagUCCAGCaacgaggcuGCGuuGCGGGUc -3'
miRNA:   3'- cAUGCCUGG---AGGUCG---------UGCggCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 82749 0.66 0.79603
Target:  5'- uUGCGGgacgagaucacgcGCgaCCGGCGgGCCGUGGAg -3'
miRNA:   3'- cAUGCC-------------UGgaGGUCGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 83226 0.76 0.272113
Target:  5'- cGUACGG-CCUCCcGCACGCacucgCGCGGAg -3'
miRNA:   3'- -CAUGCCuGGAGGuCGUGCG-----GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 87015 0.66 0.821935
Target:  5'- -aACGGGCgUgCugGGCACGCUGCGcGAg -3'
miRNA:   3'- caUGCCUGgAgG--UCGUGCGGCGC-CUa -5'
14520 5' -60.3 NC_003521.1 + 87575 0.67 0.743369
Target:  5'- -gACGGGCaggCgGGUGCGCaCGCGGAc -3'
miRNA:   3'- caUGCCUGga-GgUCGUGCG-GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 88776 0.67 0.779503
Target:  5'- -gACGGACCUgCgggugaAGCAcCGCUGCGGc- -3'
miRNA:   3'- caUGCCUGGAgG------UCGU-GCGGCGCCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.