miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 109 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 184 0.66 0.788258
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 1371 0.66 0.827584
Target:  5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 7453 0.66 0.837866
Target:  5'- --cCGGAUC-CCGGCgACGCaucCGCGGAUc -3'
miRNA:   3'- cauGCCUGGaGGUCG-UGCG---GCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 10540 0.66 0.79603
Target:  5'- aGUAUGGACUgCUAGUggugcugACGUCGUGGGUg -3'
miRNA:   3'- -CAUGCCUGGaGGUCG-------UGCGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 13978 0.71 0.541835
Target:  5'- -gAUGGGCCUgcCCGGCGCGgCgGCGGGc -3'
miRNA:   3'- caUGCCUGGA--GGUCGUGC-GgCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 18659 0.67 0.778621
Target:  5'- -cACGGACCUgCUGGCcacggggGCGCUGCaGGAc -3'
miRNA:   3'- caUGCCUGGA-GGUCG-------UGCGGCG-CCUa -5'
14520 5' -60.3 NC_003521.1 + 23970 0.69 0.618798
Target:  5'- -cACGGGCCUggaaCAGUcgucCGCCGCGGGc -3'
miRNA:   3'- caUGCCUGGAg---GUCGu---GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 24889 0.66 0.813732
Target:  5'- gGUGCGcuACCUCac-CAUGCCGCGGGa -3'
miRNA:   3'- -CAUGCc-UGGAGgucGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 28005 0.83 0.110863
Target:  5'- -aGCGGcaccucgcuguccuCCUCCAGCACGCCGCGGGg -3'
miRNA:   3'- caUGCCu-------------GGAGGUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 28311 0.67 0.779504
Target:  5'- -aGCGGcagcgACC-CCGGCGCgGCCuGCGGAc -3'
miRNA:   3'- caUGCC-----UGGaGGUCGUG-CGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 29239 0.71 0.551319
Target:  5'- cUACuGGGCCUCCAGC-CGCgGCGa-- -3'
miRNA:   3'- cAUG-CCUGGAGGUCGuGCGgCGCcua -5'
14520 5' -60.3 NC_003521.1 + 30681 0.66 0.821122
Target:  5'- -cGCGauGACCUCaugaGGCuuauaacaacgcgGCGCCGCGGGc -3'
miRNA:   3'- caUGC--CUGGAGg---UCG-------------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 33125 0.78 0.226668
Target:  5'- -aGCGGGCCuucUCCAGCACGCCGauGAc -3'
miRNA:   3'- caUGCCUGG---AGGUCGUGCGGCgcCUa -5'
14520 5' -60.3 NC_003521.1 + 34759 0.69 0.63728
Target:  5'- cGUACGaGACCacgCCGaugagguGCAUGUCGCGGAa -3'
miRNA:   3'- -CAUGC-CUGGa--GGU-------CGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 35056 0.68 0.715316
Target:  5'- gGUugGuACUUCCAGCGgGCCauGCGGGa -3'
miRNA:   3'- -CAugCcUGGAGGUCGUgCGG--CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 35806 0.68 0.723803
Target:  5'- --uCGGGCgUCgCGGCACGCCgucguuaGCGGGUc -3'
miRNA:   3'- cauGCCUGgAG-GUCGUGCGG-------CGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 42622 0.7 0.558942
Target:  5'- gGUACGGGCCgcugggaacacgUCAGCA-GCCGCGGu- -3'
miRNA:   3'- -CAUGCCUGGa-----------GGUCGUgCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 43470 0.69 0.657689
Target:  5'- -aGCGGGCCagcgcggcggCCGuGCugGCCGCGGc- -3'
miRNA:   3'- caUGCCUGGa---------GGU-CGugCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 48610 0.69 0.638252
Target:  5'- cGUGC--ACCgUCAGCACGCaCGCGGAUa -3'
miRNA:   3'- -CAUGccUGGaGGUCGUGCG-GCGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.