miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 240733 0.66 0.788258
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 240658 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 232837 0.71 0.551319
Target:  5'- --cCGGuACCUCCcccGC-CGCCGCGGAc -3'
miRNA:   3'- cauGCC-UGGAGGu--CGuGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 226870 0.68 0.705827
Target:  5'- ---aGGGCgUCCAGCGagggcaGCUGCGGGg -3'
miRNA:   3'- caugCCUGgAGGUCGUg-----CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 226468 0.68 0.715317
Target:  5'- --gUGGGCCaCCAGCACcagguacugGUCGCGGGUg -3'
miRNA:   3'- cauGCCUGGaGGUCGUG---------CGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 221899 0.67 0.77063
Target:  5'- -gGCGGAUUgCCGGCGCGCgGCGc-- -3'
miRNA:   3'- caUGCCUGGaGGUCGUGCGgCGCcua -5'
14520 5' -60.3 NC_003521.1 + 218610 0.75 0.346129
Target:  5'- gGUACGGuucgGCCgCCAGCGCGCgGCGGu- -3'
miRNA:   3'- -CAUGCC----UGGaGGUCGUGCGgCGCCua -5'
14520 5' -60.3 NC_003521.1 + 216549 0.67 0.734095
Target:  5'- -gAUGGACCugccgagggaaUCCAGguCGCCGCcGAUa -3'
miRNA:   3'- caUGCCUGG-----------AGGUCguGCGGCGcCUA- -5'
14520 5' -60.3 NC_003521.1 + 215423 0.67 0.752554
Target:  5'- -gGCGaGcCCUCCgugaAGCAgaGCCGCGGGUg -3'
miRNA:   3'- caUGC-CuGGAGG----UCGUg-CGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 211703 0.74 0.361044
Target:  5'- ---aGGGCCUCCAGCuugcCGCCGUGGc- -3'
miRNA:   3'- caugCCUGGAGGUCGu---GCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 211661 0.72 0.458592
Target:  5'- gGUAcCGGGCCUuuGGCGgagaaguUGCCGCGGAg -3'
miRNA:   3'- -CAU-GCCUGGAggUCGU-------GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 210592 0.68 0.721921
Target:  5'- -cGCGGACCUgCAGCGCgacgccaacggccgGCCGaucuCGGAg -3'
miRNA:   3'- caUGCCUGGAgGUCGUG--------------CGGC----GCCUa -5'
14520 5' -60.3 NC_003521.1 + 207899 0.66 0.788258
Target:  5'- --uUGGGCuCUCCGGCcgccaccuACGCCGgGGGc -3'
miRNA:   3'- cauGCCUG-GAGGUCG--------UGCGGCgCCUa -5'
14520 5' -60.3 NC_003521.1 + 201598 0.66 0.827584
Target:  5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 200412 0.66 0.788259
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 200338 0.74 0.384244
Target:  5'- cUGCGGcGCCgu-GGCGCGCCGCGGAc -3'
miRNA:   3'- cAUGCC-UGGaggUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 200337 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 198270 0.69 0.657689
Target:  5'- --cCGGACagCCAGCcggGCGUCGCGGAg -3'
miRNA:   3'- cauGCCUGgaGGUCG---UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 196862 0.68 0.677052
Target:  5'- -cACGuccACCUCCAGCaACGgcaCCGCGGGUg -3'
miRNA:   3'- caUGCc--UGGAGGUCG-UGC---GGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 196633 0.66 0.837866
Target:  5'- -aGCGGACUUUCucuGCGCuCuCGCGGAg -3'
miRNA:   3'- caUGCCUGGAGGu--CGUGcG-GCGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.