miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 201598 0.66 0.827584
Target:  5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 82749 0.66 0.79603
Target:  5'- uUGCGGgacgagaucacgcGCgaCCGGCGgGCCGUGGAg -3'
miRNA:   3'- cAUGCC-------------UGgaGGUCGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 167823 0.66 0.829981
Target:  5'- -aGCuGGACCcCCccgGGCAcgacCGCCGCGGGc -3'
miRNA:   3'- caUG-CCUGGaGG---UCGU----GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 10540 0.66 0.79603
Target:  5'- aGUAUGGACUgCUAGUggugcugACGUCGUGGGUg -3'
miRNA:   3'- -CAUGCCUGGaGGUCG-------UGCGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 200412 0.66 0.788259
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 73922 0.66 0.796887
Target:  5'- cUGCGGcaguucACCUacCCcGCGCGCCcGCGGAc -3'
miRNA:   3'- cAUGCC------UGGA--GGuCGUGCGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 128768 0.66 0.80538
Target:  5'- -cGCGGcguCCUCCAGCagGCGUCGCa--- -3'
miRNA:   3'- caUGCCu--GGAGGUCG--UGCGGCGccua -5'
14520 5' -60.3 NC_003521.1 + 240658 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 72159 0.66 0.821935
Target:  5'- -cAgGGACCUCCGGC--GCCGuCGGc- -3'
miRNA:   3'- caUgCCUGGAGGUCGugCGGC-GCCua -5'
14520 5' -60.3 NC_003521.1 + 172535 0.66 0.796887
Target:  5'- -gAUGGccuCCUCCAGCACcugguggauGCUGgGGAUg -3'
miRNA:   3'- caUGCCu--GGAGGUCGUG---------CGGCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 71005 0.66 0.80538
Target:  5'- cGUACGGACUgacgCUGGCugGagaCCGgCGGAg -3'
miRNA:   3'- -CAUGCCUGGa---GGUCGugC---GGC-GCCUa -5'
14520 5' -60.3 NC_003521.1 + 76205 0.66 0.80538
Target:  5'- -gAUGGGCCagaagcccgCCGGCACGCCcUGGGc -3'
miRNA:   3'- caUGCCUGGa--------GGUCGUGCGGcGCCUa -5'
14520 5' -60.3 NC_003521.1 + 172754 0.66 0.821935
Target:  5'- uUGCgGGGCCcggcauUCUGGCugccaccggggGCGCCGCGGAc -3'
miRNA:   3'- cAUG-CCUGG------AGGUCG-----------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 182175 0.66 0.821935
Target:  5'- -gACGGACggCCGGCGCGUgG-GGAUu -3'
miRNA:   3'- caUGCCUGgaGGUCGUGCGgCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 165641 0.66 0.821935
Target:  5'- -cACGGugUUgagcagCAGCACGCCGCGcGGc -3'
miRNA:   3'- caUGCCugGAg-----GUCGUGCGGCGC-CUa -5'
14520 5' -60.3 NC_003521.1 + 30681 0.66 0.821122
Target:  5'- -cGCGauGACCUCaugaGGCuuauaacaacgcgGCGCCGCGGGc -3'
miRNA:   3'- caUGC--CUGGAGg---UCG-------------UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 200337 0.66 0.813732
Target:  5'- --uCGGGCCggCGGguCGUCGCGGGg -3'
miRNA:   3'- cauGCCUGGagGUCguGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 82621 0.66 0.813732
Target:  5'- ---aGGAgCUCCAuaCACGCCGcCGGAg -3'
miRNA:   3'- caugCCUgGAGGUc-GUGCGGC-GCCUa -5'
14520 5' -60.3 NC_003521.1 + 240733 0.66 0.788258
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 111272 0.67 0.752554
Target:  5'- cGU-CGGGCCcgccgugCCAGCGcCGCCGCGa-- -3'
miRNA:   3'- -CAuGCCUGGa------GGUCGU-GCGGCGCcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.