miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 3' -55 NC_003521.1 + 156699 1.06 0.006829
Target:  5'- gCAAGAGCCUGCACGUGUGCACCACUAu -3'
miRNA:   3'- -GUUCUCGGACGUGCACACGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 140644 0.76 0.477826
Target:  5'- cCGAGAGCCUGCGCcUG-GCGCC-CUAc -3'
miRNA:   3'- -GUUCUCGGACGUGcACaCGUGGuGAU- -5'
14528 3' -55 NC_003521.1 + 213738 0.75 0.575828
Target:  5'- uCGAGAGCCUGCAC-UGccUGCGCUACc- -3'
miRNA:   3'- -GUUCUCGGACGUGcAC--ACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 238212 0.72 0.707786
Target:  5'- cCAAGAGCCUGgGCGUcgGCACgGCg- -3'
miRNA:   3'- -GUUCUCGGACgUGCAcaCGUGgUGau -5'
14528 3' -55 NC_003521.1 + 18495 0.71 0.756691
Target:  5'- gAGGAG-CUGCcCGUGUGCcACCACa- -3'
miRNA:   3'- gUUCUCgGACGuGCACACG-UGGUGau -5'
14528 3' -55 NC_003521.1 + 118943 0.7 0.811668
Target:  5'- cCAGGAGCCcaugucgcUGUACGUGUaCGCCAUg- -3'
miRNA:   3'- -GUUCUCGG--------ACGUGCACAcGUGGUGau -5'
14528 3' -55 NC_003521.1 + 20639 0.7 0.820312
Target:  5'- gGAGAGCCgcgcGCugGUGgGCGCCuACg- -3'
miRNA:   3'- gUUCUCGGa---CGugCACaCGUGG-UGau -5'
14528 3' -55 NC_003521.1 + 28342 0.69 0.860833
Target:  5'- ---cGGCCaUGUGCGUGUGgGCCACg- -3'
miRNA:   3'- guucUCGG-ACGUGCACACgUGGUGau -5'
14528 3' -55 NC_003521.1 + 226388 0.69 0.860833
Target:  5'- ----cGCCgcaggGC-CGUGUGCACCACg- -3'
miRNA:   3'- guucuCGGa----CGuGCACACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 98984 0.69 0.87565
Target:  5'- cCGGGAGCCguagGCGCGUcgcaggaacugGUGCuguuGCCGCUc -3'
miRNA:   3'- -GUUCUCGGa---CGUGCA-----------CACG----UGGUGAu -5'
14528 3' -55 NC_003521.1 + 168781 0.69 0.87565
Target:  5'- gCAAGGGUCUGCACcaggaccugGUGCagGCCACg- -3'
miRNA:   3'- -GUUCUCGGACGUGca-------CACG--UGGUGau -5'
14528 3' -55 NC_003521.1 + 127120 0.68 0.8896
Target:  5'- gAAGAGCa-GCGCGUcGUGCACCu--- -3'
miRNA:   3'- gUUCUCGgaCGUGCA-CACGUGGugau -5'
14528 3' -55 NC_003521.1 + 190818 0.68 0.8896
Target:  5'- aCAGGAGCCgacgacagGCGCG-GUGCGagaCACa- -3'
miRNA:   3'- -GUUCUCGGa-------CGUGCaCACGUg--GUGau -5'
14528 3' -55 NC_003521.1 + 151803 0.68 0.90265
Target:  5'- aAGGuGGCCgGCACGUGUucCACCACg- -3'
miRNA:   3'- gUUC-UCGGaCGUGCACAc-GUGGUGau -5'
14528 3' -55 NC_003521.1 + 60706 0.68 0.91477
Target:  5'- cCGGGGGCg-GCGCGgGUcGCACCACg- -3'
miRNA:   3'- -GUUCUCGgaCGUGCaCA-CGUGGUGau -5'
14528 3' -55 NC_003521.1 + 211880 0.68 0.91477
Target:  5'- aGAGGGCgCcGCGCGUgguauaGUGCGCCAUa- -3'
miRNA:   3'- gUUCUCG-GaCGUGCA------CACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 120238 0.68 0.91477
Target:  5'- gCAGGAGCCggcgGcCGCGccGUGCAUCGCc- -3'
miRNA:   3'- -GUUCUCGGa---C-GUGCa-CACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 136024 0.68 0.91477
Target:  5'- ----cGCCUGCACGcgGUGCuuCCGCa- -3'
miRNA:   3'- guucuCGGACGUGCa-CACGu-GGUGau -5'
14528 3' -55 NC_003521.1 + 204090 0.68 0.91477
Target:  5'- --uGGGCCacgUGCACcUGgugGCGCCACUGc -3'
miRNA:   3'- guuCUCGG---ACGUGcACa--CGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 15141 0.68 0.920477
Target:  5'- gGAGcGCCUGgaccccaacgccUugGUGcUGCACCGCUAc -3'
miRNA:   3'- gUUCuCGGAC------------GugCAC-ACGUGGUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.