miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 3' -55 NC_003521.1 + 6690 0.66 0.953794
Target:  5'- -cAGGGCCUGCGCccgcgaGCGCUGCUGg -3'
miRNA:   3'- guUCUCGGACGUGcaca--CGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 11990 0.65 0.967796
Target:  5'- aGGGAG-CUGUAUcUGUGUACCGCa- -3'
miRNA:   3'- gUUCUCgGACGUGcACACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 14134 0.66 0.949736
Target:  5'- gAAGGGCUgGCACGUGacguUGCGCCu--- -3'
miRNA:   3'- gUUCUCGGaCGUGCAC----ACGUGGugau -5'
14528 3' -55 NC_003521.1 + 15141 0.68 0.920477
Target:  5'- gGAGcGCCUGgaccccaacgccUugGUGcUGCACCGCUAc -3'
miRNA:   3'- gUUCuCGGAC------------GugCAC-ACGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 18495 0.71 0.756691
Target:  5'- gAGGAG-CUGCcCGUGUGCcACCACa- -3'
miRNA:   3'- gUUCUCgGACGuGCACACG-UGGUGau -5'
14528 3' -55 NC_003521.1 + 19543 0.67 0.940928
Target:  5'- -cAGAGCCUGauccugaugaGCGUGUGCGgcuuCUGCUGg -3'
miRNA:   3'- guUCUCGGACg---------UGCACACGU----GGUGAU- -5'
14528 3' -55 NC_003521.1 + 20639 0.7 0.820312
Target:  5'- gGAGAGCCgcgcGCugGUGgGCGCCuACg- -3'
miRNA:   3'- gUUCUCGGa---CGugCACaCGUGG-UGau -5'
14528 3' -55 NC_003521.1 + 28342 0.69 0.860833
Target:  5'- ---cGGCCaUGUGCGUGUGgGCCACg- -3'
miRNA:   3'- guucUCGG-ACGUGCACACgUGGUGau -5'
14528 3' -55 NC_003521.1 + 32131 0.66 0.953794
Target:  5'- gCAGGuAGCggGCGCG-GUGCACCAa-- -3'
miRNA:   3'- -GUUC-UCGgaCGUGCaCACGUGGUgau -5'
14528 3' -55 NC_003521.1 + 39858 0.67 0.936171
Target:  5'- -uGGGGCUUGCACGUGgugggGUugUGCa- -3'
miRNA:   3'- guUCUCGGACGUGCACa----CGugGUGau -5'
14528 3' -55 NC_003521.1 + 60706 0.68 0.91477
Target:  5'- cCGGGGGCg-GCGCGgGUcGCACCACg- -3'
miRNA:   3'- -GUUCUCGgaCGUGCaCA-CGUGGUGau -5'
14528 3' -55 NC_003521.1 + 73216 0.66 0.961232
Target:  5'- cCGAGcGCCUGCgGCGccucUGcGCGCCGCUc -3'
miRNA:   3'- -GUUCuCGGACG-UGC----ACaCGUGGUGAu -5'
14528 3' -55 NC_003521.1 + 76182 0.66 0.953794
Target:  5'- --cGGGCCUGC--GUGagGCGCCACa- -3'
miRNA:   3'- guuCUCGGACGugCACa-CGUGGUGau -5'
14528 3' -55 NC_003521.1 + 77034 0.65 0.967796
Target:  5'- uGAG-GCCgGCG-GUGgugGCGCCGCUAc -3'
miRNA:   3'- gUUCuCGGaCGUgCACa--CGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 88778 0.67 0.940928
Target:  5'- -cGGA-CCUGCGgGUGaaGCACCGCUGc -3'
miRNA:   3'- guUCUcGGACGUgCACa-CGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 98984 0.69 0.87565
Target:  5'- cCGGGAGCCguagGCGCGUcgcaggaacugGUGCuguuGCCGCUc -3'
miRNA:   3'- -GUUCUCGGa---CGUGCA-----------CACG----UGGUGAu -5'
14528 3' -55 NC_003521.1 + 111586 0.66 0.949736
Target:  5'- cCAGGuGCC-GCGCGUGgccagcgGCGCCggACUGc -3'
miRNA:   3'- -GUUCuCGGaCGUGCACa------CGUGG--UGAU- -5'
14528 3' -55 NC_003521.1 + 113480 0.65 0.967796
Target:  5'- gGAGGGCgUGCAgauCGUGgccgaccgGCAgCCGCUGa -3'
miRNA:   3'- gUUCUCGgACGU---GCACa-------CGU-GGUGAU- -5'
14528 3' -55 NC_003521.1 + 118943 0.7 0.811668
Target:  5'- cCAGGAGCCcaugucgcUGUACGUGUaCGCCAUg- -3'
miRNA:   3'- -GUUCUCGG--------ACGUGCACAcGUGGUGau -5'
14528 3' -55 NC_003521.1 + 119224 0.66 0.961232
Target:  5'- uGAGcgccAGCCaGCugGUGUGC-UCGCUGg -3'
miRNA:   3'- gUUC----UCGGaCGugCACACGuGGUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.