Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14528 | 3' | -55 | NC_003521.1 | + | 240085 | 0.67 | 0.936171 |
Target: 5'- -uGGGGCUUGCACGUGgugggGUugUGCa- -3' miRNA: 3'- guUCUCGGACGUGCACa----CGugGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 238212 | 0.72 | 0.707786 |
Target: 5'- cCAAGAGCCUGgGCGUcgGCACgGCg- -3' miRNA: 3'- -GUUCUCGGACgUGCAcaCGUGgUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 226880 | 0.65 | 0.967796 |
Target: 5'- gCGAGGGCagCUGCGgGg--GCACCACg- -3' miRNA: 3'- -GUUCUCG--GACGUgCacaCGUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 226388 | 0.69 | 0.860833 |
Target: 5'- ----cGCCgcaggGC-CGUGUGCACCACg- -3' miRNA: 3'- guucuCGGa----CGuGCACACGUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 213738 | 0.75 | 0.575828 |
Target: 5'- uCGAGAGCCUGCAC-UGccUGCGCUACc- -3' miRNA: 3'- -GUUCUCGGACGUGcAC--ACGUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 211880 | 0.68 | 0.91477 |
Target: 5'- aGAGGGCgCcGCGCGUgguauaGUGCGCCAUa- -3' miRNA: 3'- gUUCUCG-GaCGUGCA------CACGUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 204090 | 0.68 | 0.91477 |
Target: 5'- --uGGGCCacgUGCACcUGgugGCGCCACUGc -3' miRNA: 3'- guuCUCGG---ACGUGcACa--CGUGGUGAU- -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 196967 | 0.67 | 0.945449 |
Target: 5'- cCGGGAGCCgGC-CGgg-GCGCCugUGa -3' miRNA: 3'- -GUUCUCGGaCGuGCacaCGUGGugAU- -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 190818 | 0.68 | 0.8896 |
Target: 5'- aCAGGAGCCgacgacagGCGCG-GUGCGagaCACa- -3' miRNA: 3'- -GUUCUCGGa-------CGUGCaCACGUg--GUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 183848 | 0.67 | 0.945449 |
Target: 5'- gGAGAGCCUGCACucgcGCaucuACCGCUu -3' miRNA: 3'- gUUCUCGGACGUGcacaCG----UGGUGAu -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 170934 | 0.66 | 0.949736 |
Target: 5'- cCAAGAucguucucuaugGCCUGgGCGUG-GCGCUGCg- -3' miRNA: 3'- -GUUCU------------CGGACgUGCACaCGUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 168781 | 0.69 | 0.87565 |
Target: 5'- gCAAGGGUCUGCACcaggaccugGUGCagGCCACg- -3' miRNA: 3'- -GUUCUCGGACGUGca-------CACG--UGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 167906 | 0.65 | 0.967796 |
Target: 5'- -uAGAGCg-GCAgGUGggGCGCCGCg- -3' miRNA: 3'- guUCUCGgaCGUgCACa-CGUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 167471 | 0.65 | 0.967796 |
Target: 5'- uGAGGGCCgUGCGCGgcgcGUaGUugCACUu -3' miRNA: 3'- gUUCUCGG-ACGUGCa---CA-CGugGUGAu -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 162877 | 0.66 | 0.957624 |
Target: 5'- gCAGGGGC--GCGCGcagGUGgGCCGCUAc -3' miRNA: 3'- -GUUCUCGgaCGUGCa--CACgUGGUGAU- -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 156699 | 1.06 | 0.006829 |
Target: 5'- gCAAGAGCCUGCACGUGUGCACCACUAu -3' miRNA: 3'- -GUUCUCGGACGUGCACACGUGGUGAU- -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 156128 | 0.66 | 0.949736 |
Target: 5'- gGAGgccGGCCUGgAgGUGUGCACgcaGCUGc -3' miRNA: 3'- gUUC---UCGGACgUgCACACGUGg--UGAU- -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 151803 | 0.68 | 0.90265 |
Target: 5'- aAGGuGGCCgGCACGUGUucCACCACg- -3' miRNA: 3'- gUUC-UCGGaCGUGCACAc-GUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 148842 | 0.65 | 0.967796 |
Target: 5'- ---cGGCCgagGUGCGUgccGUGCACCGCg- -3' miRNA: 3'- guucUCGGa--CGUGCA---CACGUGGUGau -5' |
|||||||
14528 | 3' | -55 | NC_003521.1 | + | 143205 | 0.67 | 0.936171 |
Target: 5'- --cGAGCCUgaGCACGacgacGUGCACUGCa- -3' miRNA: 3'- guuCUCGGA--CGUGCa----CACGUGGUGau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home