miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 3' -55 NC_003521.1 + 120238 0.68 0.91477
Target:  5'- gCAGGAGCCggcgGcCGCGccGUGCAUCGCc- -3'
miRNA:   3'- -GUUCUCGGa---C-GUGCa-CACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 127120 0.68 0.8896
Target:  5'- gAAGAGCa-GCGCGUcGUGCACCu--- -3'
miRNA:   3'- gUUCUCGgaCGUGCA-CACGUGGugau -5'
14528 3' -55 NC_003521.1 + 136024 0.68 0.91477
Target:  5'- ----cGCCUGCACGcgGUGCuuCCGCa- -3'
miRNA:   3'- guucuCGGACGUGCa-CACGu-GGUGau -5'
14528 3' -55 NC_003521.1 + 140053 0.67 0.936171
Target:  5'- gCAGGAagGCCucguUGCACGaGUGCGCCAg-- -3'
miRNA:   3'- -GUUCU--CGG----ACGUGCaCACGUGGUgau -5'
14528 3' -55 NC_003521.1 + 140644 0.76 0.477826
Target:  5'- cCGAGAGCCUGCGCcUG-GCGCC-CUAc -3'
miRNA:   3'- -GUUCUCGGACGUGcACaCGUGGuGAU- -5'
14528 3' -55 NC_003521.1 + 143205 0.67 0.936171
Target:  5'- --cGAGCCUgaGCACGacgacGUGCACUGCa- -3'
miRNA:   3'- guuCUCGGA--CGUGCa----CACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 148842 0.65 0.967796
Target:  5'- ---cGGCCgagGUGCGUgccGUGCACCGCg- -3'
miRNA:   3'- guucUCGGa--CGUGCA---CACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 151803 0.68 0.90265
Target:  5'- aAGGuGGCCgGCACGUGUucCACCACg- -3'
miRNA:   3'- gUUC-UCGGaCGUGCACAc-GUGGUGau -5'
14528 3' -55 NC_003521.1 + 156128 0.66 0.949736
Target:  5'- gGAGgccGGCCUGgAgGUGUGCACgcaGCUGc -3'
miRNA:   3'- gUUC---UCGGACgUgCACACGUGg--UGAU- -5'
14528 3' -55 NC_003521.1 + 156699 1.06 0.006829
Target:  5'- gCAAGAGCCUGCACGUGUGCACCACUAu -3'
miRNA:   3'- -GUUCUCGGACGUGCACACGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 162877 0.66 0.957624
Target:  5'- gCAGGGGC--GCGCGcagGUGgGCCGCUAc -3'
miRNA:   3'- -GUUCUCGgaCGUGCa--CACgUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 167471 0.65 0.967796
Target:  5'- uGAGGGCCgUGCGCGgcgcGUaGUugCACUu -3'
miRNA:   3'- gUUCUCGG-ACGUGCa---CA-CGugGUGAu -5'
14528 3' -55 NC_003521.1 + 167906 0.65 0.967796
Target:  5'- -uAGAGCg-GCAgGUGggGCGCCGCg- -3'
miRNA:   3'- guUCUCGgaCGUgCACa-CGUGGUGau -5'
14528 3' -55 NC_003521.1 + 168781 0.69 0.87565
Target:  5'- gCAAGGGUCUGCACcaggaccugGUGCagGCCACg- -3'
miRNA:   3'- -GUUCUCGGACGUGca-------CACG--UGGUGau -5'
14528 3' -55 NC_003521.1 + 170934 0.66 0.949736
Target:  5'- cCAAGAucguucucuaugGCCUGgGCGUG-GCGCUGCg- -3'
miRNA:   3'- -GUUCU------------CGGACgUGCACaCGUGGUGau -5'
14528 3' -55 NC_003521.1 + 183848 0.67 0.945449
Target:  5'- gGAGAGCCUGCACucgcGCaucuACCGCUu -3'
miRNA:   3'- gUUCUCGGACGUGcacaCG----UGGUGAu -5'
14528 3' -55 NC_003521.1 + 190818 0.68 0.8896
Target:  5'- aCAGGAGCCgacgacagGCGCG-GUGCGagaCACa- -3'
miRNA:   3'- -GUUCUCGGa-------CGUGCaCACGUg--GUGau -5'
14528 3' -55 NC_003521.1 + 196967 0.67 0.945449
Target:  5'- cCGGGAGCCgGC-CGgg-GCGCCugUGa -3'
miRNA:   3'- -GUUCUCGGaCGuGCacaCGUGGugAU- -5'
14528 3' -55 NC_003521.1 + 204090 0.68 0.91477
Target:  5'- --uGGGCCacgUGCACcUGgugGCGCCACUGc -3'
miRNA:   3'- guuCUCGG---ACGUGcACa--CGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 211880 0.68 0.91477
Target:  5'- aGAGGGCgCcGCGCGUgguauaGUGCGCCAUa- -3'
miRNA:   3'- gUUCUCG-GaCGUGCA------CACGUGGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.