miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 3' -55 NC_003521.1 + 19543 0.67 0.940928
Target:  5'- -cAGAGCCUGauccugaugaGCGUGUGCGgcuuCUGCUGg -3'
miRNA:   3'- guUCUCGGACg---------UGCACACGU----GGUGAU- -5'
14528 3' -55 NC_003521.1 + 183848 0.67 0.945449
Target:  5'- gGAGAGCCUGCACucgcGCaucuACCGCUu -3'
miRNA:   3'- gUUCUCGGACGUGcacaCG----UGGUGAu -5'
14528 3' -55 NC_003521.1 + 196967 0.67 0.945449
Target:  5'- cCGGGAGCCgGC-CGgg-GCGCCugUGa -3'
miRNA:   3'- -GUUCUCGGaCGuGCacaCGUGGugAU- -5'
14528 3' -55 NC_003521.1 + 14134 0.66 0.949736
Target:  5'- gAAGGGCUgGCACGUGacguUGCGCCu--- -3'
miRNA:   3'- gUUCUCGGaCGUGCAC----ACGUGGugau -5'
14528 3' -55 NC_003521.1 + 156128 0.66 0.949736
Target:  5'- gGAGgccGGCCUGgAgGUGUGCACgcaGCUGc -3'
miRNA:   3'- gUUC---UCGGACgUgCACACGUGg--UGAU- -5'
14528 3' -55 NC_003521.1 + 170934 0.66 0.949736
Target:  5'- cCAAGAucguucucuaugGCCUGgGCGUG-GCGCUGCg- -3'
miRNA:   3'- -GUUCU------------CGGACgUGCACaCGUGGUGau -5'
14528 3' -55 NC_003521.1 + 111586 0.66 0.949736
Target:  5'- cCAGGuGCC-GCGCGUGgccagcgGCGCCggACUGc -3'
miRNA:   3'- -GUUCuCGGaCGUGCACa------CGUGG--UGAU- -5'
14528 3' -55 NC_003521.1 + 6690 0.66 0.953794
Target:  5'- -cAGGGCCUGCGCccgcgaGCGCUGCUGg -3'
miRNA:   3'- guUCUCGGACGUGcaca--CGUGGUGAU- -5'
14528 3' -55 NC_003521.1 + 113480 0.65 0.967796
Target:  5'- gGAGGGCgUGCAgauCGUGgccgaccgGCAgCCGCUGa -3'
miRNA:   3'- gUUCUCGgACGU---GCACa-------CGU-GGUGAU- -5'
14528 3' -55 NC_003521.1 + 211880 0.68 0.91477
Target:  5'- aGAGGGCgCcGCGCGUgguauaGUGCGCCAUa- -3'
miRNA:   3'- gUUCUCG-GaCGUGCA------CACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 120238 0.68 0.91477
Target:  5'- gCAGGAGCCggcgGcCGCGccGUGCAUCGCc- -3'
miRNA:   3'- -GUUCUCGGa---C-GUGCa-CACGUGGUGau -5'
14528 3' -55 NC_003521.1 + 127120 0.68 0.8896
Target:  5'- gAAGAGCa-GCGCGUcGUGCACCu--- -3'
miRNA:   3'- gUUCUCGgaCGUGCA-CACGUGGugau -5'
14528 3' -55 NC_003521.1 + 190818 0.68 0.8896
Target:  5'- aCAGGAGCCgacgacagGCGCG-GUGCGagaCACa- -3'
miRNA:   3'- -GUUCUCGGa-------CGUGCaCACGUg--GUGau -5'
14528 3' -55 NC_003521.1 + 98984 0.69 0.87565
Target:  5'- cCGGGAGCCguagGCGCGUcgcaggaacugGUGCuguuGCCGCUc -3'
miRNA:   3'- -GUUCUCGGa---CGUGCA-----------CACG----UGGUGAu -5'
14528 3' -55 NC_003521.1 + 168781 0.69 0.87565
Target:  5'- gCAAGGGUCUGCACcaggaccugGUGCagGCCACg- -3'
miRNA:   3'- -GUUCUCGGACGUGca-------CACG--UGGUGau -5'
14528 3' -55 NC_003521.1 + 28342 0.69 0.860833
Target:  5'- ---cGGCCaUGUGCGUGUGgGCCACg- -3'
miRNA:   3'- guucUCGG-ACGUGCACACgUGGUGau -5'
14528 3' -55 NC_003521.1 + 20639 0.7 0.820312
Target:  5'- gGAGAGCCgcgcGCugGUGgGCGCCuACg- -3'
miRNA:   3'- gUUCUCGGa---CGugCACaCGUGG-UGau -5'
14528 3' -55 NC_003521.1 + 118943 0.7 0.811668
Target:  5'- cCAGGAGCCcaugucgcUGUACGUGUaCGCCAUg- -3'
miRNA:   3'- -GUUCUCGG--------ACGUGCACAcGUGGUGau -5'
14528 3' -55 NC_003521.1 + 18495 0.71 0.756691
Target:  5'- gAGGAG-CUGCcCGUGUGCcACCACa- -3'
miRNA:   3'- gUUCUCgGACGuGCACACG-UGGUGau -5'
14528 3' -55 NC_003521.1 + 213738 0.75 0.575828
Target:  5'- uCGAGAGCCUGCAC-UGccUGCGCUACc- -3'
miRNA:   3'- -GUUCUCGGACGUGcAC--ACGUGGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.