miRNA display CGI


Results 41 - 60 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 166717 0.66 0.886052
Target:  5'- cCCaugGGCgUCGCGCAgucgcgcagcauguCGGCCAgcACCAg -3'
miRNA:   3'- -GGa--CUGgAGCGCGU--------------GCCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 112789 0.67 0.881421
Target:  5'- gCUGGCCgccuacgggcaCGCGCucugggACGGCCGcGACCc -3'
miRNA:   3'- gGACUGGa----------GCGCG------UGCCGGUaCUGGu -5'
14528 5' -58.4 NC_003521.1 + 109903 0.67 0.881421
Target:  5'- --cGACCUCGacCGC-CGacGCCGUGACCc -3'
miRNA:   3'- ggaCUGGAGC--GCGuGC--CGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 59034 0.67 0.881421
Target:  5'- ---uACCUCGCGCuuGGCCuUGAgCGc -3'
miRNA:   3'- ggacUGGAGCGCGugCCGGuACUgGU- -5'
14528 5' -58.4 NC_003521.1 + 122625 0.67 0.881421
Target:  5'- --cGGCCgCGCGCucgGCGGCCccGACUu -3'
miRNA:   3'- ggaCUGGaGCGCG---UGCCGGuaCUGGu -5'
14528 5' -58.4 NC_003521.1 + 77124 0.67 0.874635
Target:  5'- ---uGCaCUCGCGCACGGCCuUGcGCUg -3'
miRNA:   3'- ggacUG-GAGCGCGUGCCGGuAC-UGGu -5'
14528 5' -58.4 NC_003521.1 + 209499 0.67 0.874635
Target:  5'- uUCUGuuuCCUCGUGgGgGGUCAcggUGACCGu -3'
miRNA:   3'- -GGACu--GGAGCGCgUgCCGGU---ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 106585 0.67 0.874635
Target:  5'- cCCUGGCCgagggCG-GCGCGGgCAgcuacucGGCCAa -3'
miRNA:   3'- -GGACUGGa----GCgCGUGCCgGUa------CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 87264 0.67 0.874635
Target:  5'- gCUGugCgccgUGCGCGUGGCCAacgGGCCc -3'
miRNA:   3'- gGACugGa---GCGCGUGCCGGUa--CUGGu -5'
14528 5' -58.4 NC_003521.1 + 134516 0.67 0.874635
Target:  5'- --aGGCgaUGCGCACGGCCGccGCCu -3'
miRNA:   3'- ggaCUGgaGCGCGUGCCGGUacUGGu -5'
14528 5' -58.4 NC_003521.1 + 74981 0.67 0.874635
Target:  5'- uCCUGugCUCGCccgagcggguGCGCguagugaucgugGGCCAgGACCc -3'
miRNA:   3'- -GGACugGAGCG----------CGUG------------CCGGUaCUGGu -5'
14528 5' -58.4 NC_003521.1 + 94673 0.67 0.874635
Target:  5'- aCCUcgcucuCCUCGCGCucGCGGaaaAUGGCCGa -3'
miRNA:   3'- -GGAcu----GGAGCGCG--UGCCgg-UACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 34617 0.67 0.873946
Target:  5'- aCCggacGACCaugaagcuggugaUCGUGCucGCGGCCcUGGCCGc -3'
miRNA:   3'- -GGa---CUGG-------------AGCGCG--UGCCGGuACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 103125 0.67 0.873946
Target:  5'- gCUGGCgcaGCGCGCGGCgGUGcugcagcACCAg -3'
miRNA:   3'- gGACUGgagCGCGUGCCGgUAC-------UGGU- -5'
14528 5' -58.4 NC_003521.1 + 62486 0.67 0.867653
Target:  5'- gUUGAUcaucgucaaCUCGCuaGCACGcGCCGUGAUCAu -3'
miRNA:   3'- gGACUG---------GAGCG--CGUGC-CGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 45287 0.67 0.867653
Target:  5'- --gGACCgggCGcCGCugGGCCAggaGCCGg -3'
miRNA:   3'- ggaCUGGa--GC-GCGugCCGGUac-UGGU- -5'
14528 5' -58.4 NC_003521.1 + 18698 0.67 0.867653
Target:  5'- gCCaUGGCCggCGCGaucCGGCUGUGGCUg -3'
miRNA:   3'- -GG-ACUGGa-GCGCgu-GCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 74523 0.67 0.867653
Target:  5'- gCUGGCCguaCGCAacgaGGCCAcgcgGACCAg -3'
miRNA:   3'- gGACUGGagcGCGUg---CCGGUa---CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 114433 0.67 0.867653
Target:  5'- cCCgGGCUUCGCcCugACGGCCGUGcgcACCGa -3'
miRNA:   3'- -GGaCUGGAGCGcG--UGCCGGUAC---UGGU- -5'
14528 5' -58.4 NC_003521.1 + 19178 0.67 0.867653
Target:  5'- gCCUGGCUacacCGCGgGCGGCgAgcuaaGGCCAu -3'
miRNA:   3'- -GGACUGGa---GCGCgUGCCGgUa----CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.