miRNA display CGI


Results 21 - 40 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 200490 0.66 0.906527
Target:  5'- uCCUGGCCaaacuggcggCGCGCACcgagcuGGCCAaggGGCuCAa -3'
miRNA:   3'- -GGACUGGa---------GCGCGUG------CCGGUa--CUG-GU- -5'
14528 5' -58.4 NC_003521.1 + 134238 0.66 0.906527
Target:  5'- gCUG-CC-CGCGCcgcccuCGGCCAgggUGACCc -3'
miRNA:   3'- gGACuGGaGCGCGu-----GCCGGU---ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 79104 0.66 0.906527
Target:  5'- -aUGACCUCGCGCAaccGCUcgGugUc -3'
miRNA:   3'- ggACUGGAGCGCGUgc-CGGuaCugGu -5'
14528 5' -58.4 NC_003521.1 + 176598 0.66 0.906527
Target:  5'- aCCUGGaugagcacguCCUCGCGCuGCuGC-GUGGCCAg -3'
miRNA:   3'- -GGACU----------GGAGCGCG-UGcCGgUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 108930 0.66 0.90594
Target:  5'- -aUGGCCaucaUCaGUGCGCGGCUgucgguggcgucuAUGACCAc -3'
miRNA:   3'- ggACUGG----AG-CGCGUGCCGG-------------UACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 53193 0.66 0.900562
Target:  5'- -aUGGCCagCgGCGCGCGGCCcgGcucGCCc -3'
miRNA:   3'- ggACUGGa-G-CGCGUGCCGGuaC---UGGu -5'
14528 5' -58.4 NC_003521.1 + 106209 0.66 0.900562
Target:  5'- -gUGGCCaucuccgaGUGCGCGGCgcaCAUGGCCGu -3'
miRNA:   3'- ggACUGGag------CGCGUGCCG---GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 103777 0.66 0.900562
Target:  5'- gCUUGAaCUCGCGCACucgccGCCGUGcuCCGg -3'
miRNA:   3'- -GGACUgGAGCGCGUGc----CGGUACu-GGU- -5'
14528 5' -58.4 NC_003521.1 + 129997 0.66 0.900562
Target:  5'- gCUGcGCCggcggcggCGCGCaACGGCCGcUGGCUu -3'
miRNA:   3'- gGAC-UGGa-------GCGCG-UGCCGGU-ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 56903 0.66 0.899954
Target:  5'- cCCUGguguugcACCgguacaGCGCcgugACGGCCGUGGCUc -3'
miRNA:   3'- -GGAC-------UGGag----CGCG----UGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 222737 0.66 0.894388
Target:  5'- gCUcAUCUCGCGCGCcgucugGGCUAcGGCCAc -3'
miRNA:   3'- gGAcUGGAGCGCGUG------CCGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 146188 0.66 0.894388
Target:  5'- gCUGGCCg-GCGgACGGCCcuucaacugcGACCAc -3'
miRNA:   3'- gGACUGGagCGCgUGCCGGua--------CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 134799 0.66 0.894388
Target:  5'- cCCUG-CUUCGCGCcCGaGCCcUGGCa- -3'
miRNA:   3'- -GGACuGGAGCGCGuGC-CGGuACUGgu -5'
14528 5' -58.4 NC_003521.1 + 130133 0.66 0.890584
Target:  5'- gCCUucGACCUcaagcucgaggccacCGaCGCGCuggccgaccgGGCCGUGACCGu -3'
miRNA:   3'- -GGA--CUGGA---------------GC-GCGUG----------CCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 93715 0.66 0.890584
Target:  5'- cCCUGACCggcgucggagaaaagUCGCGUGa-GCCGUcGGCCGa -3'
miRNA:   3'- -GGACUGG---------------AGCGCGUgcCGGUA-CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 17786 0.66 0.888006
Target:  5'- aCCUGgagGCCgucggCGUGC-UGGCCGUgcGACCGg -3'
miRNA:   3'- -GGAC---UGGa----GCGCGuGCCGGUA--CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 112392 0.66 0.888006
Target:  5'- aCCUGGCUg-GCGCAgugcgccgacCGGCCGccuuucgGACCGa -3'
miRNA:   3'- -GGACUGGagCGCGU----------GCCGGUa------CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 234196 0.66 0.888006
Target:  5'- --gGGCCaagcguUCGCGCGCGGCCu---CCGa -3'
miRNA:   3'- ggaCUGG------AGCGCGUGCCGGuacuGGU- -5'
14528 5' -58.4 NC_003521.1 + 83980 0.66 0.888006
Target:  5'- -gUGACC-CGCGaCAUGGCCAcguagaugUGGCUc -3'
miRNA:   3'- ggACUGGaGCGC-GUGCCGGU--------ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 43473 0.66 0.888006
Target:  5'- --gGGCCa-GCGCgGCGGCCGugcUGGCCGc -3'
miRNA:   3'- ggaCUGGagCGCG-UGCCGGU---ACUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.