miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 40716 0.78 0.317641
Target:  5'- -gUGugCUgGCGCGCGGCUGUGACUg -3'
miRNA:   3'- ggACugGAgCGCGUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 43089 0.68 0.829982
Target:  5'- uCgUGGCCUaCGCGCGCGaCgAgcUGACCAa -3'
miRNA:   3'- -GgACUGGA-GCGCGUGCcGgU--ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 43399 0.68 0.837866
Target:  5'- gCCaUGGCCUCuuCGCuuuCGGCguCGUGGCCAg -3'
miRNA:   3'- -GG-ACUGGAGc-GCGu--GCCG--GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 43473 0.66 0.888006
Target:  5'- --gGGCCa-GCGCgGCGGCCGugcUGGCCGc -3'
miRNA:   3'- ggaCUGGagCGCG-UGCCGGU---ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 43495 0.75 0.450723
Target:  5'- -aUGACCUCGCcCAgGGCC-UGGCCGa -3'
miRNA:   3'- ggACUGGAGCGcGUgCCGGuACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 45287 0.67 0.867653
Target:  5'- --gGACCgggCGcCGCugGGCCAggaGCCGg -3'
miRNA:   3'- ggaCUGGa--GC-GCGugCCGGUac-UGGU- -5'
14528 5' -58.4 NC_003521.1 + 45422 0.68 0.80538
Target:  5'- gCCgGugCcCGCcgucgGCGCGGUCAUGGCCu -3'
miRNA:   3'- -GGaCugGaGCG-----CGUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 52372 0.72 0.59938
Target:  5'- gCUGAgCUgGUGCAcaguccgcguguCGGCCAUGACUAc -3'
miRNA:   3'- gGACUgGAgCGCGU------------GCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 53193 0.66 0.900562
Target:  5'- -aUGGCCagCgGCGCGCGGCCcgGcucGCCc -3'
miRNA:   3'- ggACUGGa-G-CGCGUGCCGGuaC---UGGu -5'
14528 5' -58.4 NC_003521.1 + 53624 0.69 0.761644
Target:  5'- --cGGuCC-CGUGCACGGUCAUGAuCCAc -3'
miRNA:   3'- ggaCU-GGaGCGCGUGCCGGUACU-GGU- -5'
14528 5' -58.4 NC_003521.1 + 56903 0.66 0.899954
Target:  5'- cCCUGguguugcACCgguacaGCGCcgugACGGCCGUGGCUc -3'
miRNA:   3'- -GGAC-------UGGag----CGCG----UGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 57243 0.66 0.912279
Target:  5'- --cGGCuCUCGCGC--GGCCAguUGGCCu -3'
miRNA:   3'- ggaCUG-GAGCGCGugCCGGU--ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 57501 0.71 0.677052
Target:  5'- cCCaUGACggCGCGCACGGCgcUGAUCAc -3'
miRNA:   3'- -GG-ACUGgaGCGCGUGCCGguACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 59034 0.67 0.881421
Target:  5'- ---uACCUCGCGCuuGGCCuUGAgCGc -3'
miRNA:   3'- ggacUGGAGCGCGugCCGGuACUgGU- -5'
14528 5' -58.4 NC_003521.1 + 59070 0.72 0.59938
Target:  5'- gUUGuCCUCGUcggccggaucGCGCGGCCGcuUGGCCAg -3'
miRNA:   3'- gGACuGGAGCG----------CGUGCCGGU--ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 59516 0.74 0.477235
Target:  5'- cCCUGGCC-CGCGgGCGGCC-UGAgCu -3'
miRNA:   3'- -GGACUGGaGCGCgUGCCGGuACUgGu -5'
14528 5' -58.4 NC_003521.1 + 62486 0.67 0.867653
Target:  5'- gUUGAUcaucgucaaCUCGCuaGCACGcGCCGUGAUCAu -3'
miRNA:   3'- gGACUG---------GAGCG--CGUGC-CGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 64694 0.68 0.821935
Target:  5'- --aGaACCU-GCGCGCGGCCAacGCCAu -3'
miRNA:   3'- ggaC-UGGAgCGCGUGCCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 65032 0.72 0.609081
Target:  5'- uCCUGGCC-CGCGUGCaGCCccGGCUAa -3'
miRNA:   3'- -GGACUGGaGCGCGUGcCGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 66648 0.74 0.495331
Target:  5'- aCCUgucGACCuUCGUGCGCGGCCugcaGGCCc -3'
miRNA:   3'- -GGA---CUGG-AGCGCGUGCCGGua--CUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.