miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 394 0.78 0.317641
Target:  5'- -gUGugCUgGCGCGCGGCUGUGACUg -3'
miRNA:   3'- ggACugGAgCGCGUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 912 0.67 0.853121
Target:  5'- aCC--AUCUgGCGCACGGCguuCAUGGCUAa -3'
miRNA:   3'- -GGacUGGAgCGCGUGCCG---GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 2631 0.66 0.917817
Target:  5'- uCUUGGCCUCGa-CuuGGCUAUGAUCc -3'
miRNA:   3'- -GGACUGGAGCgcGugCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 13183 0.72 0.59938
Target:  5'- uCCUGACCagGCGUGCcGCUcgGGCCGc -3'
miRNA:   3'- -GGACUGGagCGCGUGcCGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 16680 0.66 0.917817
Target:  5'- uCCUGACCUgGCcCGacuCGGCCcacGGCCu -3'
miRNA:   3'- -GGACUGGAgCGcGU---GCCGGua-CUGGu -5'
14528 5' -58.4 NC_003521.1 + 17786 0.66 0.888006
Target:  5'- aCCUGgagGCCgucggCGUGC-UGGCCGUgcGACCGg -3'
miRNA:   3'- -GGAC---UGGa----GCGCGuGCCGGUA--CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 18698 0.67 0.867653
Target:  5'- gCCaUGGCCggCGCGaucCGGCUGUGGCUg -3'
miRNA:   3'- -GG-ACUGGa-GCGCgu-GCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 19178 0.67 0.867653
Target:  5'- gCCUGGCUacacCGCGgGCGGCgAgcuaaGGCCAu -3'
miRNA:   3'- -GGACUGGa---GCGCgUGCCGgUa----CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 19466 0.7 0.715317
Target:  5'- --gGACCaugUCGCuGCGCGGCCAgGugCAg -3'
miRNA:   3'- ggaCUGG---AGCG-CGUGCCGGUaCugGU- -5'
14528 5' -58.4 NC_003521.1 + 22179 0.66 0.917817
Target:  5'- --gGACgaggCGcCGC-CGGCCGUGGCCGc -3'
miRNA:   3'- ggaCUGga--GC-GCGuGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 22413 0.72 0.609081
Target:  5'- gCUGGCCaUGCuGCGCGGC-GUGGCCGa -3'
miRNA:   3'- gGACUGGaGCG-CGUGCCGgUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 23599 0.67 0.853121
Target:  5'- gCUGGCCugcauccucuUCGCgaucuGCACcGCCGUGGCCu -3'
miRNA:   3'- gGACUGG----------AGCG-----CGUGcCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 25693 0.7 0.743369
Target:  5'- gCUGGCCuUCGUG-GCGGCCcUGAUCGu -3'
miRNA:   3'- gGACUGG-AGCGCgUGCCGGuACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 28319 0.68 0.813732
Target:  5'- --cGACCcCG-GCGCGGCCugcgGACCGc -3'
miRNA:   3'- ggaCUGGaGCgCGUGCCGGua--CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 32077 0.71 0.677052
Target:  5'- aCUGGCC-CGUGgcCACGGCCAgcGCCAu -3'
miRNA:   3'- gGACUGGaGCGC--GUGCCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 34076 0.67 0.86048
Target:  5'- gUUGACCUCGUGCAgggaggugUGGUCGaugGGCCc -3'
miRNA:   3'- gGACUGGAGCGCGU--------GCCGGUa--CUGGu -5'
14528 5' -58.4 NC_003521.1 + 34617 0.67 0.873946
Target:  5'- aCCggacGACCaugaagcuggugaUCGUGCucGCGGCCcUGGCCGc -3'
miRNA:   3'- -GGa---CUGG-------------AGCGCG--UGCCGGuACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 37407 0.75 0.42504
Target:  5'- cCCgGGCCUUGUGCgACGGCCugggaggcGUGGCCGg -3'
miRNA:   3'- -GGaCUGGAGCGCG-UGCCGG--------UACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 37460 0.69 0.752554
Target:  5'- -gUGGgCUCGCGCGCGGgccaCCGUGguGCCGc -3'
miRNA:   3'- ggACUgGAGCGCGUGCC----GGUAC--UGGU- -5'
14528 5' -58.4 NC_003521.1 + 40320 0.69 0.77063
Target:  5'- cCUUGGCCagcucggUGCGCGCcGCCAguuUGGCCAg -3'
miRNA:   3'- -GGACUGGa------GCGCGUGcCGGU---ACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.