miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 85840 0.7 0.705827
Target:  5'- -aUGAUCUCGUagAgGGCCAUGACCu -3'
miRNA:   3'- ggACUGGAGCGcgUgCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 225597 0.71 0.647976
Target:  5'- --cGGCCUCGCGCuCGGCCGccUGcaGCCc -3'
miRNA:   3'- ggaCUGGAGCGCGuGCCGGU--AC--UGGu -5'
14528 5' -58.4 NC_003521.1 + 32077 0.71 0.677052
Target:  5'- aCUGGCC-CGUGgcCACGGCCAgcGCCAu -3'
miRNA:   3'- gGACUGGaGCGC--GUGCCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 57501 0.71 0.677052
Target:  5'- cCCaUGACggCGCGCACGGCgcUGAUCAc -3'
miRNA:   3'- -GG-ACUGgaGCGCGUGCCGguACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 70531 0.71 0.677052
Target:  5'- aCC--GCCUCGCGCuCGGCC--GGCCGa -3'
miRNA:   3'- -GGacUGGAGCGCGuGCCGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 129777 0.71 0.677052
Target:  5'- gCCUGuCC-CGCGCACGugcgcGCCGaGGCCGa -3'
miRNA:   3'- -GGACuGGaGCGCGUGC-----CGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 195069 0.71 0.677052
Target:  5'- uCCUGACgcgguCUCGCGCuacaaaaccCGGCC-UGACCc -3'
miRNA:   3'- -GGACUG-----GAGCGCGu--------GCCGGuACUGGu -5'
14528 5' -58.4 NC_003521.1 + 197414 0.7 0.696281
Target:  5'- gUCUGGCCacgaCGCcgaaaGCGaagaGGCCAUGGCCAg -3'
miRNA:   3'- -GGACUGGa---GCG-----CGUg---CCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 222223 0.7 0.705827
Target:  5'- uCCUGACCgCG-GCugGGCCGcagGaACCAg -3'
miRNA:   3'- -GGACUGGaGCgCGugCCGGUa--C-UGGU- -5'
14528 5' -58.4 NC_003521.1 + 226380 0.72 0.628524
Target:  5'- gCUGACgC-CGcCGCAgGGCCGUGugCAc -3'
miRNA:   3'- gGACUG-GaGC-GCGUgCCGGUACugGU- -5'
14528 5' -58.4 NC_003521.1 + 163407 0.72 0.618798
Target:  5'- cCCUGGCCUCGCGaCACGGUguuuggagAUGAUgAg -3'
miRNA:   3'- -GGACUGGAGCGC-GUGCCGg-------UACUGgU- -5'
14528 5' -58.4 NC_003521.1 + 228779 0.72 0.618798
Target:  5'- -aUGACCUCcagGUGCAacaGGCCGUGACg- -3'
miRNA:   3'- ggACUGGAG---CGCGUg--CCGGUACUGgu -5'
14528 5' -58.4 NC_003521.1 + 114408 0.82 0.192335
Target:  5'- gCCUGGCCgccaUCGCGCAgGGCCGaGACCu -3'
miRNA:   3'- -GGACUGG----AGCGCGUgCCGGUaCUGGu -5'
14528 5' -58.4 NC_003521.1 + 394 0.78 0.317641
Target:  5'- -gUGugCUgGCGCGCGGCUGUGACUg -3'
miRNA:   3'- ggACugGAgCGCGUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 123339 0.75 0.450723
Target:  5'- aCCgacGGCCccaGCGcCGCGGCCGUGGCCu -3'
miRNA:   3'- -GGa--CUGGag-CGC-GUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 66648 0.74 0.495331
Target:  5'- aCCUgucGACCuUCGUGCGCGGCCugcaGGCCc -3'
miRNA:   3'- -GGA---CUGG-AGCGCGUGCCGGua--CUGGu -5'
14528 5' -58.4 NC_003521.1 + 166300 0.72 0.59938
Target:  5'- gCgUGGCCUCguuGCGUACGGCCAgcagGGCg- -3'
miRNA:   3'- -GgACUGGAG---CGCGUGCCGGUa---CUGgu -5'
14528 5' -58.4 NC_003521.1 + 59070 0.72 0.59938
Target:  5'- gUUGuCCUCGUcggccggaucGCGCGGCCGcuUGGCCAg -3'
miRNA:   3'- gGACuGGAGCG----------CGUGCCGGU--ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 65032 0.72 0.609081
Target:  5'- uCCUGGCC-CGCGUGCaGCCccGGCUAa -3'
miRNA:   3'- -GGACUGGaGCGCGUGcCGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 139924 0.72 0.609081
Target:  5'- gCUGcuCCUCgGgGCACGGCCGgaaGGCCAg -3'
miRNA:   3'- gGACu-GGAG-CgCGUGCCGGUa--CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.