miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 112392 0.66 0.888006
Target:  5'- aCCUGGCUg-GCGCAgugcgccgacCGGCCGccuuucgGACCGa -3'
miRNA:   3'- -GGACUGGagCGCGU----------GCCGGUa------CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 93715 0.66 0.890584
Target:  5'- cCCUGACCggcgucggagaaaagUCGCGUGa-GCCGUcGGCCGa -3'
miRNA:   3'- -GGACUGG---------------AGCGCGUgcCGGUA-CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 234196 0.66 0.888006
Target:  5'- --gGGCCaagcguUCGCGCGCGGCCu---CCGa -3'
miRNA:   3'- ggaCUGG------AGCGCGUGCCGGuacuGGU- -5'
14528 5' -58.4 NC_003521.1 + 79104 0.66 0.906527
Target:  5'- -aUGACCUCGCGCAaccGCUcgGugUc -3'
miRNA:   3'- ggACUGGAGCGCGUgc-CGGuaCugGu -5'
14528 5' -58.4 NC_003521.1 + 141621 0.66 0.917817
Target:  5'- uCCagGACUgCGC-CGCGGCCGUcACCGa -3'
miRNA:   3'- -GGa-CUGGaGCGcGUGCCGGUAcUGGU- -5'
14528 5' -58.4 NC_003521.1 + 129997 0.66 0.900562
Target:  5'- gCUGcGCCggcggcggCGCGCaACGGCCGcUGGCUu -3'
miRNA:   3'- gGAC-UGGa-------GCGCG-UGCCGGU-ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 146188 0.66 0.894388
Target:  5'- gCUGGCCg-GCGgACGGCCcuucaacugcGACCAc -3'
miRNA:   3'- gGACUGGagCGCgUGCCGGua--------CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 16680 0.66 0.917817
Target:  5'- uCCUGACCUgGCcCGacuCGGCCcacGGCCu -3'
miRNA:   3'- -GGACUGGAgCGcGU---GCCGGua-CUGGu -5'
14528 5' -58.4 NC_003521.1 + 53193 0.66 0.900562
Target:  5'- -aUGGCCagCgGCGCGCGGCCcgGcucGCCc -3'
miRNA:   3'- ggACUGGa-G-CGCGUGCCGGuaC---UGGu -5'
14528 5' -58.4 NC_003521.1 + 172135 0.66 0.917817
Target:  5'- -aUGAgUUCGU-CGCGGCaCAUGGCCGc -3'
miRNA:   3'- ggACUgGAGCGcGUGCCG-GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 166717 0.66 0.886052
Target:  5'- cCCaugGGCgUCGCGCAgucgcgcagcauguCGGCCAgcACCAg -3'
miRNA:   3'- -GGa--CUGgAGCGCGU--------------GCCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 57243 0.66 0.912279
Target:  5'- --cGGCuCUCGCGC--GGCCAguUGGCCu -3'
miRNA:   3'- ggaCUG-GAGCGCGugCCGGU--ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 223672 0.66 0.912279
Target:  5'- gCCUcGGCCUCGCGCcGCuGCUGgaACCAc -3'
miRNA:   3'- -GGA-CUGGAGCGCG-UGcCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 134238 0.66 0.906527
Target:  5'- gCUG-CC-CGCGCcgcccuCGGCCAgggUGACCc -3'
miRNA:   3'- gGACuGGaGCGCGu-----GCCGGU---ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 163095 0.66 0.917817
Target:  5'- gCCcGuCCUCGgGCGCcagcGCCAcGACCAc -3'
miRNA:   3'- -GGaCuGGAGCgCGUGc---CGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 222737 0.66 0.894388
Target:  5'- gCUcAUCUCGCGCGCcgucugGGCUAcGGCCAc -3'
miRNA:   3'- gGAcUGGAGCGCGUG------CCGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 103777 0.66 0.900562
Target:  5'- gCUUGAaCUCGCGCACucgccGCCGUGcuCCGg -3'
miRNA:   3'- -GGACUgGAGCGCGUGc----CGGUACu-GGU- -5'
14528 5' -58.4 NC_003521.1 + 145587 0.66 0.912279
Target:  5'- --cGGCacgaCGCG-GCGGCCGUGGCCu -3'
miRNA:   3'- ggaCUGga--GCGCgUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 134138 0.66 0.919972
Target:  5'- cCCUGAaguggauggcgugcaUCUCGuCGCACaGGUagGUGGCCAu -3'
miRNA:   3'- -GGACU---------------GGAGC-GCGUG-CCGg-UACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 108930 0.66 0.90594
Target:  5'- -aUGGCCaucaUCaGUGCGCGGCUgucgguggcgucuAUGACCAc -3'
miRNA:   3'- ggACUGG----AG-CGCGUGCCGG-------------UACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.