miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 156735 1.1 0.002789
Target:  5'- gCCUGACCUCGCGCACGGCCAUGACCAu -3'
miRNA:   3'- -GGACUGGAGCGCGUGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 114408 0.82 0.192335
Target:  5'- gCCUGGCCgccaUCGCGCAgGGCCGaGACCu -3'
miRNA:   3'- -GGACUGG----AGCGCGUgCCGGUaCUGGu -5'
14528 5' -58.4 NC_003521.1 + 113653 0.81 0.201651
Target:  5'- aCCUGuGCCUCaUGC-CGGCCAUGACCAa -3'
miRNA:   3'- -GGAC-UGGAGcGCGuGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 40716 0.78 0.317641
Target:  5'- -gUGugCUgGCGCGCGGCUGUGACUg -3'
miRNA:   3'- ggACugGAgCGCGUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 394 0.78 0.317641
Target:  5'- -gUGugCUgGCGCGCGGCUGUGACUg -3'
miRNA:   3'- ggACugGAgCGCGUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 190612 0.77 0.353531
Target:  5'- aCCUGACUUCGCGCucuuCGGgCG-GACCGg -3'
miRNA:   3'- -GGACUGGAGCGCGu---GCCgGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 37407 0.75 0.42504
Target:  5'- cCCgGGCCUUGUGCgACGGCCugggaggcGUGGCCGg -3'
miRNA:   3'- -GGaCUGGAGCGCG-UGCCGG--------UACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 106099 0.75 0.433504
Target:  5'- aCCgcaaGGCCUCGgGCACGGgCGUGGCg- -3'
miRNA:   3'- -GGa---CUGGAGCgCGUGCCgGUACUGgu -5'
14528 5' -58.4 NC_003521.1 + 43495 0.75 0.450723
Target:  5'- -aUGACCUCGCcCAgGGCC-UGGCCGa -3'
miRNA:   3'- ggACUGGAGCGcGUgCCGGuACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 123339 0.75 0.450723
Target:  5'- aCCgacGGCCccaGCGcCGCGGCCGUGGCCu -3'
miRNA:   3'- -GGa--CUGGag-CGC-GUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 59516 0.74 0.477235
Target:  5'- cCCUGGCC-CGCGgGCGGCC-UGAgCu -3'
miRNA:   3'- -GGACUGGaGCGCgUGCCGGuACUgGu -5'
14528 5' -58.4 NC_003521.1 + 186159 0.74 0.477235
Target:  5'- --cGGCCUgCGUGCACGGCCAgGACa- -3'
miRNA:   3'- ggaCUGGA-GCGCGUGCCGGUaCUGgu -5'
14528 5' -58.4 NC_003521.1 + 137949 0.74 0.486243
Target:  5'- cUCUGcGCCUCGCuacGCACGGCCcaGACCu -3'
miRNA:   3'- -GGAC-UGGAGCG---CGUGCCGGuaCUGGu -5'
14528 5' -58.4 NC_003521.1 + 66648 0.74 0.495331
Target:  5'- aCCUgucGACCuUCGUGCGCGGCCugcaGGCCc -3'
miRNA:   3'- -GGA---CUGG-AGCGCGUGCCGGua--CUGGu -5'
14528 5' -58.4 NC_003521.1 + 98925 0.73 0.532407
Target:  5'- gUCUG--CUCGCGCACGGCCGUGcgcAUCAc -3'
miRNA:   3'- -GGACugGAGCGCGUGCCGGUAC---UGGU- -5'
14528 5' -58.4 NC_003521.1 + 104887 0.73 0.570431
Target:  5'- cCCgaGGCgUCGCacauccCGCGGCCGUGGCCGa -3'
miRNA:   3'- -GGa-CUGgAGCGc-----GUGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 141140 0.72 0.580049
Target:  5'- cCCgaGACCUucggcaacccCGUGCACcgGGCCAUGGCCu -3'
miRNA:   3'- -GGa-CUGGA----------GCGCGUG--CCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 13183 0.72 0.59938
Target:  5'- uCCUGACCagGCGUGCcGCUcgGGCCGc -3'
miRNA:   3'- -GGACUGGagCGCGUGcCGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 59070 0.72 0.59938
Target:  5'- gUUGuCCUCGUcggccggaucGCGCGGCCGcuUGGCCAg -3'
miRNA:   3'- gGACuGGAGCG----------CGUGCCGGU--ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 166300 0.72 0.59938
Target:  5'- gCgUGGCCUCguuGCGUACGGCCAgcagGGCg- -3'
miRNA:   3'- -GgACUGGAG---CGCGUGCCGGUa---CUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.