miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 59070 0.72 0.59938
Target:  5'- gUUGuCCUCGUcggccggaucGCGCGGCCGcuUGGCCAg -3'
miRNA:   3'- gGACuGGAGCG----------CGUGCCGGU--ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 65032 0.72 0.609081
Target:  5'- uCCUGGCC-CGCGUGCaGCCccGGCUAa -3'
miRNA:   3'- -GGACUGGaGCGCGUGcCGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 139924 0.72 0.609081
Target:  5'- gCUGcuCCUCgGgGCACGGCCGgaaGGCCAg -3'
miRNA:   3'- gGACu-GGAG-CgCGUGCCGGUa--CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 22413 0.72 0.609081
Target:  5'- gCUGGCCaUGCuGCGCGGC-GUGGCCGa -3'
miRNA:   3'- gGACUGGaGCG-CGUGCCGgUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 228779 0.72 0.618798
Target:  5'- -aUGACCUCcagGUGCAacaGGCCGUGACg- -3'
miRNA:   3'- ggACUGGAG---CGCGUg--CCGGUACUGgu -5'
14528 5' -58.4 NC_003521.1 + 163407 0.72 0.618798
Target:  5'- cCCUGGCCUCGCGaCACGGUguuuggagAUGAUgAg -3'
miRNA:   3'- -GGACUGGAGCGC-GUGCCGg-------UACUGgU- -5'
14528 5' -58.4 NC_003521.1 + 135774 0.72 0.618798
Target:  5'- cCCUGGggcugCUCGCGCACGGgCG-GGCCGu -3'
miRNA:   3'- -GGACUg----GAGCGCGUGCCgGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 226380 0.72 0.628524
Target:  5'- gCUGACgC-CGcCGCAgGGCCGUGugCAc -3'
miRNA:   3'- gGACUG-GaGC-GCGUgCCGGUACugGU- -5'
14528 5' -58.4 NC_003521.1 + 84070 0.71 0.638252
Target:  5'- cCCUGGCuCUUG-GCgAUGGUCAUGGCCGu -3'
miRNA:   3'- -GGACUG-GAGCgCG-UGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 225597 0.71 0.647976
Target:  5'- --cGGCCUCGCGCuCGGCCGccUGcaGCCc -3'
miRNA:   3'- ggaCUGGAGCGCGuGCCGGU--AC--UGGu -5'
14528 5' -58.4 NC_003521.1 + 184017 0.71 0.654777
Target:  5'- gCC-GACUcguUCGCGCgcgacgccgguuggGCGGCCAUGugCAa -3'
miRNA:   3'- -GGaCUGG---AGCGCG--------------UGCCGGUACugGU- -5'
14528 5' -58.4 NC_003521.1 + 187711 0.71 0.661569
Target:  5'- aCCUGAUCUCGCGCuCGGgcuuCCAcggauucgucucgaaUGGCCu -3'
miRNA:   3'- -GGACUGGAGCGCGuGCC----GGU---------------ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 89795 0.71 0.677052
Target:  5'- --aGACCUCGaUGCA-GGCCGUGAgCAu -3'
miRNA:   3'- ggaCUGGAGC-GCGUgCCGGUACUgGU- -5'
14528 5' -58.4 NC_003521.1 + 70531 0.71 0.677052
Target:  5'- aCC--GCCUCGCGCuCGGCC--GGCCGa -3'
miRNA:   3'- -GGacUGGAGCGCGuGCCGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 87384 0.71 0.677052
Target:  5'- gCUGGCCUacgaGCGCGacCGGCUGcugcUGACCAc -3'
miRNA:   3'- gGACUGGAg---CGCGU--GCCGGU----ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 32077 0.71 0.677052
Target:  5'- aCUGGCC-CGUGgcCACGGCCAgcGCCAu -3'
miRNA:   3'- gGACUGGaGCGC--GUGCCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 57501 0.71 0.677052
Target:  5'- cCCaUGACggCGCGCACGGCgcUGAUCAc -3'
miRNA:   3'- -GG-ACUGgaGCGCGUGCCGguACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 129777 0.71 0.677052
Target:  5'- gCCUGuCC-CGCGCACGugcgcGCCGaGGCCGa -3'
miRNA:   3'- -GGACuGGaGCGCGUGC-----CGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 195069 0.71 0.677052
Target:  5'- uCCUGACgcgguCUCGCGCuacaaaaccCGGCC-UGACCc -3'
miRNA:   3'- -GGACUG-----GAGCGCGu--------GCCGGuACUGGu -5'
14528 5' -58.4 NC_003521.1 + 181321 0.71 0.686687
Target:  5'- --aGAgCUCGCGCACGGCUucgAUGAgCu -3'
miRNA:   3'- ggaCUgGAGCGCGUGCCGG---UACUgGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.