miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 200490 0.66 0.906527
Target:  5'- uCCUGGCCaaacuggcggCGCGCACcgagcuGGCCAaggGGCuCAa -3'
miRNA:   3'- -GGACUGGa---------GCGCGUG------CCGGUa--CUG-GU- -5'
14528 5' -58.4 NC_003521.1 + 103665 0.66 0.912279
Target:  5'- --cGGCCgcuGCGgcCGCGGCCAUGGCgGg -3'
miRNA:   3'- ggaCUGGag-CGC--GUGCCGGUACUGgU- -5'
14528 5' -58.4 NC_003521.1 + 235091 0.66 0.912279
Target:  5'- aCCaUGACa-CGCGC-CGuGCCcgGGCCGu -3'
miRNA:   3'- -GG-ACUGgaGCGCGuGC-CGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 22179 0.66 0.917817
Target:  5'- --gGACgaggCGcCGC-CGGCCGUGGCCGc -3'
miRNA:   3'- ggaCUGga--GC-GCGuGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 106209 0.66 0.900562
Target:  5'- -gUGGCCaucuccgaGUGCGCGGCgcaCAUGGCCGu -3'
miRNA:   3'- ggACUGGag------CGCGUGCCG---GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 115678 0.66 0.917817
Target:  5'- gCUGACCaUCGCcgacCugGGCaaacUGGCCAa -3'
miRNA:   3'- gGACUGG-AGCGc---GugCCGgu--ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 145587 0.66 0.912279
Target:  5'- --cGGCacgaCGCG-GCGGCCGUGGCCu -3'
miRNA:   3'- ggaCUGga--GCGCgUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 141621 0.66 0.917817
Target:  5'- uCCagGACUgCGC-CGCGGCCGUcACCGa -3'
miRNA:   3'- -GGa-CUGGaGCGcGUGCCGGUAcUGGU- -5'
14528 5' -58.4 NC_003521.1 + 140345 0.66 0.912279
Target:  5'- aCCUGGCggCGguaGCaACGGCCGUcACCAc -3'
miRNA:   3'- -GGACUGgaGCg--CG-UGCCGGUAcUGGU- -5'
14528 5' -58.4 NC_003521.1 + 166717 0.66 0.886052
Target:  5'- cCCaugGGCgUCGCGCAgucgcgcagcauguCGGCCAgcACCAg -3'
miRNA:   3'- -GGa--CUGgAGCGCGU--------------GCCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 83980 0.66 0.888006
Target:  5'- -gUGACC-CGCGaCAUGGCCAcguagaugUGGCUc -3'
miRNA:   3'- ggACUGGaGCGC-GUGCCGGU--------ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 89519 0.66 0.917817
Target:  5'- gCCUGGCCgccuugCGCGCGuCGGaacCCAggcugcgGGCCc -3'
miRNA:   3'- -GGACUGGa-----GCGCGU-GCC---GGUa------CUGGu -5'
14528 5' -58.4 NC_003521.1 + 195799 0.66 0.917817
Target:  5'- --aGGUCUCGCccuGCACGGCCGUGGgaucggauuCCAg -3'
miRNA:   3'- ggaCUGGAGCG---CGUGCCGGUACU---------GGU- -5'
14528 5' -58.4 NC_003521.1 + 172135 0.66 0.917817
Target:  5'- -aUGAgUUCGU-CGCGGCaCAUGGCCGc -3'
miRNA:   3'- ggACUgGAGCGcGUGCCG-GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 17786 0.66 0.888006
Target:  5'- aCCUGgagGCCgucggCGUGC-UGGCCGUgcGACCGg -3'
miRNA:   3'- -GGAC---UGGa----GCGCGuGCCGGUA--CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 56903 0.66 0.899954
Target:  5'- cCCUGguguugcACCgguacaGCGCcgugACGGCCGUGGCUc -3'
miRNA:   3'- -GGAC-------UGGag----CGCG----UGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 176598 0.66 0.906527
Target:  5'- aCCUGGaugagcacguCCUCGCGCuGCuGC-GUGGCCAg -3'
miRNA:   3'- -GGACU----------GGAGCGCG-UGcCGgUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 197338 0.66 0.917817
Target:  5'- gUUGGCCgccgCGgccaGCACGGCCGccgcgcUGGCCc -3'
miRNA:   3'- gGACUGGa---GCg---CGUGCCGGU------ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 179534 0.66 0.917817
Target:  5'- uCCUugGACaggUGCGCGCGGCuCAgcGCCAa -3'
miRNA:   3'- -GGA--CUGga-GCGCGUGCCG-GUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 2631 0.66 0.917817
Target:  5'- uCUUGGCCUCGa-CuuGGCUAUGAUCc -3'
miRNA:   3'- -GGACUGGAGCgcGugCCGGUACUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.