miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 113653 0.81 0.201651
Target:  5'- aCCUGuGCCUCaUGC-CGGCCAUGACCAa -3'
miRNA:   3'- -GGAC-UGGAGcGCGuGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 184017 0.71 0.654777
Target:  5'- gCC-GACUcguUCGCGCgcgacgccgguuggGCGGCCAUGugCAa -3'
miRNA:   3'- -GGaCUGG---AGCGCG--------------UGCCGGUACugGU- -5'
14528 5' -58.4 NC_003521.1 + 89795 0.71 0.677052
Target:  5'- --aGACCUCGaUGCA-GGCCGUGAgCAu -3'
miRNA:   3'- ggaCUGGAGC-GCGUgCCGGUACUgGU- -5'
14528 5' -58.4 NC_003521.1 + 172135 0.66 0.917817
Target:  5'- -aUGAgUUCGU-CGCGGCaCAUGGCCGc -3'
miRNA:   3'- ggACUgGAGCGcGUGCCG-GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 106099 0.75 0.433504
Target:  5'- aCCgcaaGGCCUCGgGCACGGgCGUGGCg- -3'
miRNA:   3'- -GGa---CUGGAGCgCGUGCCgGUACUGgu -5'
14528 5' -58.4 NC_003521.1 + 43495 0.75 0.450723
Target:  5'- -aUGACCUCGCcCAgGGCC-UGGCCGa -3'
miRNA:   3'- ggACUGGAGCGcGUgCCGGuACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 59516 0.74 0.477235
Target:  5'- cCCUGGCC-CGCGgGCGGCC-UGAgCu -3'
miRNA:   3'- -GGACUGGaGCGCgUGCCGGuACUgGu -5'
14528 5' -58.4 NC_003521.1 + 137949 0.74 0.486243
Target:  5'- cUCUGcGCCUCGCuacGCACGGCCcaGACCu -3'
miRNA:   3'- -GGAC-UGGAGCG---CGUGCCGGuaCUGGu -5'
14528 5' -58.4 NC_003521.1 + 141140 0.72 0.580049
Target:  5'- cCCgaGACCUucggcaacccCGUGCACcgGGCCAUGGCCu -3'
miRNA:   3'- -GGa-CUGGA----------GCGCGUG--CCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 84070 0.71 0.638252
Target:  5'- cCCUGGCuCUUG-GCgAUGGUCAUGGCCGu -3'
miRNA:   3'- -GGACUG-GAGCgCG-UGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 52372 0.72 0.59938
Target:  5'- gCUGAgCUgGUGCAcaguccgcguguCGGCCAUGACUAc -3'
miRNA:   3'- gGACUgGAgCGCGU------------GCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 104887 0.73 0.570431
Target:  5'- cCCgaGGCgUCGCacauccCGCGGCCGUGGCCGa -3'
miRNA:   3'- -GGa-CUGgAGCGc-----GUGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 40716 0.78 0.317641
Target:  5'- -gUGugCUgGCGCGCGGCUGUGACUg -3'
miRNA:   3'- ggACugGAgCGCGUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 22413 0.72 0.609081
Target:  5'- gCUGGCCaUGCuGCGCGGC-GUGGCCGa -3'
miRNA:   3'- gGACUGGaGCG-CGUGCCGgUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 190612 0.77 0.353531
Target:  5'- aCCUGACUUCGCGCucuuCGGgCG-GACCGg -3'
miRNA:   3'- -GGACUGGAGCGCGu---GCCgGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 98925 0.73 0.532407
Target:  5'- gUCUG--CUCGCGCACGGCCGUGcgcAUCAc -3'
miRNA:   3'- -GGACugGAGCGCGUGCCGGUAC---UGGU- -5'
14528 5' -58.4 NC_003521.1 + 135774 0.72 0.618798
Target:  5'- cCCUGGggcugCUCGCGCACGGgCG-GGCCGu -3'
miRNA:   3'- -GGACUg----GAGCGCGUGCCgGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 187711 0.71 0.661569
Target:  5'- aCCUGAUCUCGCGCuCGGgcuuCCAcggauucgucucgaaUGGCCu -3'
miRNA:   3'- -GGACUGGAGCGCGuGCC----GGU---------------ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 37407 0.75 0.42504
Target:  5'- cCCgGGCCUUGUGCgACGGCCugggaggcGUGGCCGg -3'
miRNA:   3'- -GGaCUGGAGCGCG-UGCCGG--------UACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 186159 0.74 0.477235
Target:  5'- --cGGCCUgCGUGCACGGCCAgGACa- -3'
miRNA:   3'- ggaCUGGA-GCGCGUGCCGGUaCUGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.