miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 235091 0.66 0.912279
Target:  5'- aCCaUGACa-CGCGC-CGuGCCcgGGCCGu -3'
miRNA:   3'- -GG-ACUGgaGCGCGuGC-CGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 235014 0.68 0.829982
Target:  5'- cCCUGGCCUcCGCGgaCGCGGgUuuacgGACCGg -3'
miRNA:   3'- -GGACUGGA-GCGC--GUGCCgGua---CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 234813 0.68 0.829982
Target:  5'- uCCUcGGCCUCGuCGuCGgGGUuCGUGGCCGa -3'
miRNA:   3'- -GGA-CUGGAGC-GC-GUgCCG-GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 234196 0.66 0.888006
Target:  5'- --gGGCCaagcguUCGCGCGCGGCCu---CCGa -3'
miRNA:   3'- ggaCUGG------AGCGCGUGCCGGuacuGGU- -5'
14528 5' -58.4 NC_003521.1 + 228779 0.72 0.618798
Target:  5'- -aUGACCUCcagGUGCAacaGGCCGUGACg- -3'
miRNA:   3'- ggACUGGAG---CGCGUg--CCGGUACUGgu -5'
14528 5' -58.4 NC_003521.1 + 226380 0.72 0.628524
Target:  5'- gCUGACgC-CGcCGCAgGGCCGUGugCAc -3'
miRNA:   3'- gGACUG-GaGC-GCGUgCCGGUACugGU- -5'
14528 5' -58.4 NC_003521.1 + 226058 0.68 0.813732
Target:  5'- aCCUcGGCCacgaaggCGCGCccCGGCCGcGGCCGg -3'
miRNA:   3'- -GGA-CUGGa------GCGCGu-GCCGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 225597 0.71 0.647976
Target:  5'- --cGGCCUCGCGCuCGGCCGccUGcaGCCc -3'
miRNA:   3'- ggaCUGGAGCGCGuGCCGGU--AC--UGGu -5'
14528 5' -58.4 NC_003521.1 + 223672 0.66 0.912279
Target:  5'- gCCUcGGCCUCGCGCcGCuGCUGgaACCAc -3'
miRNA:   3'- -GGA-CUGGAGCGCG-UGcCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 223300 0.66 0.910576
Target:  5'- aCUGGCUgaauccCGCGC-CGccgggccgggaaccGCCGUGACCGg -3'
miRNA:   3'- gGACUGGa-----GCGCGuGC--------------CGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 223053 0.7 0.743369
Target:  5'- aCCUGACCgucCGcCGC-CGGCgGUacGGCCAg -3'
miRNA:   3'- -GGACUGGa--GC-GCGuGCCGgUA--CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 222737 0.66 0.894388
Target:  5'- gCUcAUCUCGCGCGCcgucugGGCUAcGGCCAc -3'
miRNA:   3'- gGAcUGGAGCGCGUG------CCGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 222694 0.67 0.845581
Target:  5'- --cGACCUCG-GUGCGGCCGggcgugcgGAUCAc -3'
miRNA:   3'- ggaCUGGAGCgCGUGCCGGUa-------CUGGU- -5'
14528 5' -58.4 NC_003521.1 + 222223 0.7 0.705827
Target:  5'- uCCUGACCgCG-GCugGGCCGcagGaACCAg -3'
miRNA:   3'- -GGACUGGaGCgCGugCCGGUa--C-UGGU- -5'
14528 5' -58.4 NC_003521.1 + 222123 0.69 0.796887
Target:  5'- gCCacaGCCggaUCGCGC-CGGCCAUGGCgAa -3'
miRNA:   3'- -GGac-UGG---AGCGCGuGCCGGUACUGgU- -5'
14528 5' -58.4 NC_003521.1 + 218619 0.69 0.77063
Target:  5'- --cGGCCgccagCGCGCggcgguaaGCGGCCAcGGCCGg -3'
miRNA:   3'- ggaCUGGa----GCGCG--------UGCCGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 213364 0.69 0.788259
Target:  5'- aCCUGGCCagccuggCGCuCACGGCCGaauucGGCCu -3'
miRNA:   3'- -GGACUGGa------GCGcGUGCCGGUa----CUGGu -5'
14528 5' -58.4 NC_003521.1 + 211827 0.7 0.71437
Target:  5'- uCCggggGACCgucucguUCGCGUACGGCagcGACCAc -3'
miRNA:   3'- -GGa---CUGG-------AGCGCGUGCCGguaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 211448 0.69 0.779504
Target:  5'- uCCUcGGCCUCGCGguCggggcaGGCCAUGAg-- -3'
miRNA:   3'- -GGA-CUGGAGCGCguG------CCGGUACUggu -5'
14528 5' -58.4 NC_003521.1 + 209499 0.67 0.874635
Target:  5'- uUCUGuuuCCUCGUGgGgGGUCAcggUGACCGu -3'
miRNA:   3'- -GGACu--GGAGCGCgUgCCGGU---ACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.