miRNA display CGI


Results 41 - 60 of 428 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 3' -56.6 NC_003521.1 + 130366 0.66 0.948708
Target:  5'- aGGCGcCGuGcgCGCuCAGCGCCACCGg- -3'
miRNA:   3'- gCUGUuGC-Ca-GCG-GUCGUGGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 25548 0.66 0.948708
Target:  5'- gCGACGGCGGaCGCUguuguGCagGCgGCCGCGg -3'
miRNA:   3'- -GCUGUUGCCaGCGGu----CG--UGgUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 153709 0.66 0.948708
Target:  5'- gCGACGA-GGUgGUgGGCGCCAC-GCAg -3'
miRNA:   3'- -GCUGUUgCCAgCGgUCGUGGUGgUGU- -5'
14534 3' -56.6 NC_003521.1 + 18478 0.66 0.948708
Target:  5'- gCGGCGAguGUCGCCuggaggAGCugcccguguGCCACCACAc -3'
miRNA:   3'- -GCUGUUgcCAGCGG------UCG---------UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 233959 0.66 0.948708
Target:  5'- aCGACGACGGaucCGCUAcccacGCcucCCACUACAa -3'
miRNA:   3'- -GCUGUUGCCa--GCGGU-----CGu--GGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 25886 0.66 0.948708
Target:  5'- gGACGAUGGUCuGCCcGCuguacauguuCCGCCAg- -3'
miRNA:   3'- gCUGUUGCCAG-CGGuCGu---------GGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 128480 0.66 0.946216
Target:  5'- gGGCAGCGGcgugaggcugugcgCGCCGGC-CUGCgACAg -3'
miRNA:   3'- gCUGUUGCCa-------------GCGGUCGuGGUGgUGU- -5'
14534 3' -56.6 NC_003521.1 + 50505 0.66 0.944511
Target:  5'- uCGGCGGCGGUgGagaUGGUACCaauggGCCGCGg -3'
miRNA:   3'- -GCUGUUGCCAgCg--GUCGUGG-----UGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 61846 0.66 0.944511
Target:  5'- gGGCGccgcggaaccGCGG-CGCCuguccauGCgACCACCACGg -3'
miRNA:   3'- gCUGU----------UGCCaGCGGu------CG-UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 217484 0.66 0.944511
Target:  5'- aGACAcagcaggaacguGCaGGUgGCCuGCAUgGCCACGg -3'
miRNA:   3'- gCUGU------------UG-CCAgCGGuCGUGgUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 111150 0.66 0.944511
Target:  5'- gGGCcacggGACGGUcCGCaUAGCGCgGCCGCc -3'
miRNA:   3'- gCUG-----UUGCCA-GCG-GUCGUGgUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 2014 0.66 0.944511
Target:  5'- gGAC-ACGG-CGUC-GCGCC-CCACAa -3'
miRNA:   3'- gCUGuUGCCaGCGGuCGUGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 18543 0.66 0.944511
Target:  5'- uGGC-ACGGg-GCUcugGGCACCAUCACGc -3'
miRNA:   3'- gCUGuUGCCagCGG---UCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 166738 0.66 0.944511
Target:  5'- -cGCAGCauGUCgGCCAGCACCAgCugGa -3'
miRNA:   3'- gcUGUUGc-CAG-CGGUCGUGGUgGugU- -5'
14534 3' -56.6 NC_003521.1 + 13443 0.66 0.944511
Target:  5'- gGACGACGGaCGUCaAGCGCaGCgGCGg -3'
miRNA:   3'- gCUGUUGCCaGCGG-UCGUGgUGgUGU- -5'
14534 3' -56.6 NC_003521.1 + 197330 0.66 0.944511
Target:  5'- uGACGGauGUUggccgccgcgGCCAGCACgGCCGCc -3'
miRNA:   3'- gCUGUUgcCAG----------CGGUCGUGgUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 177734 0.66 0.944511
Target:  5'- gGAgGGCGGgcagcgCGCCGGCGCagCugUACGg -3'
miRNA:   3'- gCUgUUGCCa-----GCGGUCGUG--GugGUGU- -5'
14534 3' -56.6 NC_003521.1 + 105439 0.66 0.944511
Target:  5'- uCGGC-ACGGUuuggcgccCGCgGGCgauaACCGCCGCGg -3'
miRNA:   3'- -GCUGuUGCCA--------GCGgUCG----UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 150784 0.66 0.944511
Target:  5'- gCGACGACGG--GCgGGCGCgaGCCGCc -3'
miRNA:   3'- -GCUGUUGCCagCGgUCGUGg-UGGUGu -5'
14534 3' -56.6 NC_003521.1 + 132962 0.66 0.944511
Target:  5'- aCGACGACGaUUGCCGuaACuuCACCACGu -3'
miRNA:   3'- -GCUGUUGCcAGCGGUcgUG--GUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.