miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14536 5' -53.6 NC_003521.1 + 165595 1.11 0.005936
Target:  5'- aGCCUAAGUGACGGUGAGAUCCAGGCUg -3'
miRNA:   3'- -CGGAUUCACUGCCACUCUAGGUCCGA- -5'
14536 5' -53.6 NC_003521.1 + 127323 0.75 0.680455
Target:  5'- cGCuCUcGGUGACGGccaUGAGggCCAGGCc -3'
miRNA:   3'- -CG-GAuUCACUGCC---ACUCuaGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 75261 0.72 0.838183
Target:  5'- -gCUGAGUGGCcGUGuGAUCCguAGGCUg -3'
miRNA:   3'- cgGAUUCACUGcCACuCUAGG--UCCGA- -5'
14536 5' -53.6 NC_003521.1 + 38466 0.72 0.854025
Target:  5'- cGUCUGGGcucUGGCGGUGGGcgCC-GGCg -3'
miRNA:   3'- -CGGAUUC---ACUGCCACUCuaGGuCCGa -5'
14536 5' -53.6 NC_003521.1 + 172302 0.7 0.909114
Target:  5'- cGCCguccGGUGuCGGUG-GcgCCAGGCc -3'
miRNA:   3'- -CGGau--UCACuGCCACuCuaGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 115661 0.7 0.920645
Target:  5'- cGCCccAGUGGCgGGUGAaGAaggcggCCAGGCg -3'
miRNA:   3'- -CGGauUCACUG-CCACU-CUa-----GGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 217711 0.69 0.931243
Target:  5'- uGCUUGuagcagguuAGUGuaguucAUGGUGAGAUUCAGGCc -3'
miRNA:   3'- -CGGAU---------UCAC------UGCCACUCUAGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 98960 0.69 0.940906
Target:  5'- gGCCU-GGUGGCuGGUGAGGcggugCCGGGa- -3'
miRNA:   3'- -CGGAuUCACUG-CCACUCUa----GGUCCga -5'
14536 5' -53.6 NC_003521.1 + 219175 0.69 0.94539
Target:  5'- aGCgUGuuccAGUGGCGGcUGAGccCCAGGCc -3'
miRNA:   3'- -CGgAU----UCACUGCC-ACUCuaGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 236486 0.69 0.94539
Target:  5'- cGCC--GGcGGCGGUG-GcgCCAGGCa -3'
miRNA:   3'- -CGGauUCaCUGCCACuCuaGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 207514 0.68 0.953673
Target:  5'- uGCCagcAGUGACgugGGUGAGA-CCaAGGCa -3'
miRNA:   3'- -CGGau-UCACUG---CCACUCUaGG-UCCGa -5'
14536 5' -53.6 NC_003521.1 + 233543 0.68 0.961064
Target:  5'- uGCCUGucuAGUcGAC-GUGGGAUCcCAGGUg -3'
miRNA:   3'- -CGGAU---UCA-CUGcCACUCUAG-GUCCGa -5'
14536 5' -53.6 NC_003521.1 + 209551 0.68 0.961064
Target:  5'- cGCCcggcgGGGUGGCGGcgacgguggcgGGGGUCCGGGg- -3'
miRNA:   3'- -CGGa----UUCACUGCCa----------CUCUAGGUCCga -5'
14536 5' -53.6 NC_003521.1 + 149048 0.68 0.961064
Target:  5'- cGCCcGGGUGugGG-GGGAUgCGGGa- -3'
miRNA:   3'- -CGGaUUCACugCCaCUCUAgGUCCga -5'
14536 5' -53.6 NC_003521.1 + 19933 0.67 0.970552
Target:  5'- cCCgaggAGGUGGgcgagaucgUGGUGAGGUggCCGGGCUg -3'
miRNA:   3'- cGGa---UUCACU---------GCCACUCUA--GGUCCGA- -5'
14536 5' -53.6 NC_003521.1 + 150537 0.67 0.978257
Target:  5'- aGCCgugGGGUccGGCGGUGGuGGUgCGGGUg -3'
miRNA:   3'- -CGGa--UUCA--CUGCCACU-CUAgGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 172800 0.67 0.98046
Target:  5'- cGCCgcccGUGGCGGUGAGGcUCAcGCa -3'
miRNA:   3'- -CGGauu-CACUGCCACUCUaGGUcCGa -5'
14536 5' -53.6 NC_003521.1 + 31649 0.66 0.982491
Target:  5'- cGCCcAGGUGuCGGuUGuucUCCAGGCg -3'
miRNA:   3'- -CGGaUUCACuGCC-ACucuAGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 59207 0.66 0.982491
Target:  5'- uCCUGAGUcGCGuG-GAGAUCgGGGCc -3'
miRNA:   3'- cGGAUUCAcUGC-CaCUCUAGgUCCGa -5'
14536 5' -53.6 NC_003521.1 + 155661 0.66 0.982491
Target:  5'- -gCUGGGUGGCGGcgGAGGUCUGGaCg -3'
miRNA:   3'- cgGAUUCACUGCCa-CUCUAGGUCcGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.