Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14536 | 5' | -53.6 | NC_003521.1 | + | 9682 | 0.66 | 0.990358 |
Target: 5'- cGCCUccAAGUGAUGGUaaAGAUaaCCAGGa- -3' miRNA: 3'- -CGGA--UUCACUGCCAc-UCUA--GGUCCga -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 19933 | 0.67 | 0.970552 |
Target: 5'- cCCgaggAGGUGGgcgagaucgUGGUGAGGUggCCGGGCUg -3' miRNA: 3'- cGGa---UUCACU---------GCCACUCUA--GGUCCGA- -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 22992 | 0.66 | 0.987638 |
Target: 5'- cGCCUGGuUGACGGUGAuagcgGcAUCCgaggAGGCc -3' miRNA: 3'- -CGGAUUcACUGCCACU-----C-UAGG----UCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 27449 | 0.66 | 0.98436 |
Target: 5'- gGCCgaauucGGCcGUGAGcgCCAGGCUg -3' miRNA: 3'- -CGGauuca-CUGcCACUCuaGGUCCGA- -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 31649 | 0.66 | 0.982491 |
Target: 5'- cGCCcAGGUGuCGGuUGuucUCCAGGCg -3' miRNA: 3'- -CGGaUUCACuGCC-ACucuAGGUCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 32373 | 0.66 | 0.990358 |
Target: 5'- gGCUUuuGGUGGCGcGUGgccAGGUCCucGGGCg -3' miRNA: 3'- -CGGAu-UCACUGC-CAC---UCUAGG--UCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 38466 | 0.72 | 0.854025 |
Target: 5'- cGUCUGGGcucUGGCGGUGGGcgCC-GGCg -3' miRNA: 3'- -CGGAUUC---ACUGCCACUCuaGGuCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 59207 | 0.66 | 0.982491 |
Target: 5'- uCCUGAGUcGCGuG-GAGAUCgGGGCc -3' miRNA: 3'- cGGAUUCAcUGC-CaCUCUAGgUCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 69236 | 0.66 | 0.989064 |
Target: 5'- cUCUGAGaGACGGgGAGA-CCAGGgUg -3' miRNA: 3'- cGGAUUCaCUGCCaCUCUaGGUCCgA- -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 75261 | 0.72 | 0.838183 |
Target: 5'- -gCUGAGUGGCcGUGuGAUCCguAGGCUg -3' miRNA: 3'- cgGAUUCACUGcCACuCUAGG--UCCGA- -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 98960 | 0.69 | 0.940906 |
Target: 5'- gGCCU-GGUGGCuGGUGAGGcggugCCGGGa- -3' miRNA: 3'- -CGGAuUCACUG-CCACUCUa----GGUCCga -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 99377 | 0.66 | 0.98436 |
Target: 5'- uGCUgguGGUcgucggcgaaGAUGGUGAGGUCCAGcaGCg -3' miRNA: 3'- -CGGau-UCA----------CUGCCACUCUAGGUC--CGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 101473 | 0.66 | 0.989064 |
Target: 5'- cGCCUcguAGUGGCGcGUGAGGUgCucgagcagcGGCg -3' miRNA: 3'- -CGGAu--UCACUGC-CACUCUAgGu--------CCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 105825 | 0.66 | 0.990358 |
Target: 5'- aGCCagauGGUGggGCGGaugaUGAGGUCCGauuGGCUa -3' miRNA: 3'- -CGGau--UCAC--UGCC----ACUCUAGGU---CCGA- -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 115661 | 0.7 | 0.920645 |
Target: 5'- cGCCccAGUGGCgGGUGAaGAaggcggCCAGGCg -3' miRNA: 3'- -CGGauUCACUG-CCACU-CUa-----GGUCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 120060 | 0.66 | 0.986073 |
Target: 5'- gGCCccAGUGGCaGGccGGcAUCCAGGCg -3' miRNA: 3'- -CGGauUCACUG-CCacUC-UAGGUCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 127323 | 0.75 | 0.680455 |
Target: 5'- cGCuCUcGGUGACGGccaUGAGggCCAGGCc -3' miRNA: 3'- -CG-GAuUCACUGCC---ACUCuaGGUCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 132258 | 0.66 | 0.990358 |
Target: 5'- cGCUgaGAGUGACagaGGUGguauacggccaGGGUCCGGGUg -3' miRNA: 3'- -CGGa-UUCACUG---CCAC-----------UCUAGGUCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 141286 | 0.66 | 0.987638 |
Target: 5'- cGCCUccGcGACaGGUGcAGGUgCGGGCg -3' miRNA: 3'- -CGGAuuCaCUG-CCAC-UCUAgGUCCGa -5' |
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14536 | 5' | -53.6 | NC_003521.1 | + | 148499 | 0.66 | 0.987638 |
Target: 5'- ---cGAGgcgGGCGGaUGGGAUCCGGGaCg -3' miRNA: 3'- cggaUUCa--CUGCC-ACUCUAGGUCC-Ga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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