miRNA display CGI


Results 41 - 60 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 5' -55.1 NC_003521.1 + 7730 0.68 0.920051
Target:  5'- gUGGGGagGGCGGcGCGAgCGgcgGAgGCg -3'
miRNA:   3'- gACCCCaaCCGCU-CGCUaGUa--CUgCG- -5'
14545 5' -55.1 NC_003521.1 + 18730 0.69 0.914471
Target:  5'- gCUGGc---GGCG-GCGAUCGUGGCGg -3'
miRNA:   3'- -GACCccaaCCGCuCGCUAGUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 239334 0.69 0.914471
Target:  5'- --aGGGUUGGCGcAGUcGUCcgGGCGUc -3'
miRNA:   3'- gacCCCAACCGC-UCGcUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 39106 0.69 0.914471
Target:  5'- --aGGGUUGGCGcAGUcGUCcgGGCGUc -3'
miRNA:   3'- gacCCCAACCGC-UCGcUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 159773 0.69 0.908667
Target:  5'- gCUGGGGUUGGCGcAGUGcGUCA--ACa- -3'
miRNA:   3'- -GACCCCAACCGC-UCGC-UAGUacUGcg -5'
14545 5' -55.1 NC_003521.1 + 47563 0.69 0.90264
Target:  5'- -cGGGGaagacGGCGAGCGggCcacgGugGCg -3'
miRNA:   3'- gaCCCCaa---CCGCUCGCuaGua--CugCG- -5'
14545 5' -55.1 NC_003521.1 + 204726 0.69 0.90264
Target:  5'- -cGGGGagggUGGCGAG-GGUgGUGAUGg -3'
miRNA:   3'- gaCCCCa---ACCGCUCgCUAgUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 37327 0.69 0.896391
Target:  5'- uCUGGG--UGG-GGGCGGUCGcggagGACGCa -3'
miRNA:   3'- -GACCCcaACCgCUCGCUAGUa----CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 177186 0.69 0.895755
Target:  5'- -cGGGGUUGcGCGuGCGGUacuucucCAggcGGCGCu -3'
miRNA:   3'- gaCCCCAAC-CGCuCGCUA-------GUa--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 167045 0.7 0.883245
Target:  5'- -cGGGcagcGGCGuGGCGcUCAUGACGCc -3'
miRNA:   3'- gaCCCcaa-CCGC-UCGCuAGUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 186756 0.7 0.881199
Target:  5'- gCUGGGGcucGGCGgcaucggcggaggcGGCGGUgGUGGCGg -3'
miRNA:   3'- -GACCCCaa-CCGC--------------UCGCUAgUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 122712 0.7 0.876353
Target:  5'- -cGGGGcUGGa-GGCGGUCGUGGuCGUg -3'
miRNA:   3'- gaCCCCaACCgcUCGCUAGUACU-GCG- -5'
14545 5' -55.1 NC_003521.1 + 209558 0.7 0.876353
Target:  5'- -cGGGGUggcggcgacggUGGCGGG-GGUCcgggGGCGCa -3'
miRNA:   3'- gaCCCCA-----------ACCGCUCgCUAGua--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 26609 0.7 0.876353
Target:  5'- uUGGGGcaaucgGGCacGCGGUCGUGuACGCc -3'
miRNA:   3'- gACCCCaa----CCGcuCGCUAGUAC-UGCG- -5'
14545 5' -55.1 NC_003521.1 + 150467 0.7 0.861956
Target:  5'- uCUGGGGc-GGCGAGCGccUgGUGGgGCc -3'
miRNA:   3'- -GACCCCaaCCGCUCGCu-AgUACUgCG- -5'
14545 5' -55.1 NC_003521.1 + 18687 0.7 0.861215
Target:  5'- uCUGGGGUuucgccaUGGcCGGcGCGAUCcggcUGugGCu -3'
miRNA:   3'- -GACCCCA-------ACC-GCU-CGCUAGu---ACugCG- -5'
14545 5' -55.1 NC_003521.1 + 229181 0.7 0.85446
Target:  5'- -cGGGGUaucgGGCGA-CGAUagguUGGCGCg -3'
miRNA:   3'- gaCCCCAa---CCGCUcGCUAgu--ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 174215 0.7 0.85446
Target:  5'- uUGGGGUcGcGCGGGuCGggCAggGGCGCg -3'
miRNA:   3'- gACCCCAaC-CGCUC-GCuaGUa-CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 19450 0.7 0.85446
Target:  5'- -gGGGGgaGGCGcGGCGGgacCAUGuCGCu -3'
miRNA:   3'- gaCCCCaaCCGC-UCGCUa--GUACuGCG- -5'
14545 5' -55.1 NC_003521.1 + 170871 0.7 0.85446
Target:  5'- -cGGGGgcgGGCGcgGGUGGUCA-GGCGUc -3'
miRNA:   3'- gaCCCCaa-CCGC--UCGCUAGUaCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.