miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 121813 0.68 0.977892
Target:  5'- cGGcCGUGGUGG--GGU-AGUGGUgCACg -3'
miRNA:   3'- -CC-GCACCACUugCCAuUUACCGgGUG- -5'
14547 5' -53 NC_003521.1 + 123210 0.66 0.993305
Target:  5'- cGGCGccgGGUaGGacgggggcgGCGGUAGGUGGUcguagcgCCGCg -3'
miRNA:   3'- -CCGCa--CCA-CU---------UGCCAUUUACCG-------GGUG- -5'
14547 5' -53 NC_003521.1 + 124098 0.68 0.969214
Target:  5'- cGGCGUGGgcggGAAgcagcgcgucgcugUGGUGAuucccGCCCGCg -3'
miRNA:   3'- -CCGCACCa---CUU--------------GCCAUUuac--CGGGUG- -5'
14547 5' -53 NC_003521.1 + 124196 0.78 0.547699
Target:  5'- cGGCugggGGUGAGCGGgcccuuucUGGCCCGCg -3'
miRNA:   3'- -CCGca--CCACUUGCCauuu----ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 128320 0.68 0.977892
Target:  5'- -cCGUGGUGuagccGCGGUccucgggcAGGUacaGGCCCACg -3'
miRNA:   3'- ccGCACCACu----UGCCA--------UUUA---CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 129218 0.7 0.940138
Target:  5'- cGCGUGGUGGGCaGUcc--GGCgCCGCu -3'
miRNA:   3'- cCGCACCACUUGcCAuuuaCCG-GGUG- -5'
14547 5' -53 NC_003521.1 + 134697 0.68 0.967099
Target:  5'- ---cUGGUG-GCGGUAGGU-GCCCACg -3'
miRNA:   3'- ccgcACCACuUGCCAUUUAcCGGGUG- -5'
14547 5' -53 NC_003521.1 + 142941 0.66 0.988714
Target:  5'- cGGCGgucagGGUcAGCGG-GGGccccuggucucccUGGCCCGCa -3'
miRNA:   3'- -CCGCa----CCAcUUGCCaUUU-------------ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 148441 0.68 0.975229
Target:  5'- cGGCGgcuccaggGGUGGcCGGUGcGUGcugaugacgaaaaGCCCGCg -3'
miRNA:   3'- -CCGCa-------CCACUuGCCAUuUAC-------------CGGGUG- -5'
14547 5' -53 NC_003521.1 + 150549 0.66 0.99426
Target:  5'- cGGCgGUGGUGGuGCGGguGGUGGCggCgGCg -3'
miRNA:   3'- -CCG-CACCACU-UGCCauUUACCG--GgUG- -5'
14547 5' -53 NC_003521.1 + 158884 0.66 0.991358
Target:  5'- uGCaUGGUG-ACGGUGAccaccGCCCGCu -3'
miRNA:   3'- cCGcACCACuUGCCAUUuac--CGGGUG- -5'
14547 5' -53 NC_003521.1 + 162982 0.66 0.992432
Target:  5'- --aGUGGUGGgcACGG---GUGGCCC-Ca -3'
miRNA:   3'- ccgCACCACU--UGCCauuUACCGGGuG- -5'
14547 5' -53 NC_003521.1 + 163815 0.7 0.919705
Target:  5'- cGGCGUGGUcAACGGcauGAUGccgugccuGCCCAUc -3'
miRNA:   3'- -CCGCACCAcUUGCCau-UUAC--------CGGGUG- -5'
14547 5' -53 NC_003521.1 + 164217 0.7 0.940138
Target:  5'- cGGCgGUGGUagcggcggcuGGACGGUGGA-GGCUCGg -3'
miRNA:   3'- -CCG-CACCA----------CUUGCCAUUUaCCGGGUg -5'
14547 5' -53 NC_003521.1 + 164616 0.67 0.980124
Target:  5'- gGGCGUGcc-GGCGGgcuucUGGCCCAUc -3'
miRNA:   3'- -CCGCACcacUUGCCauuu-ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 165121 0.69 0.960495
Target:  5'- cGGCuGUGGUGcgGACGGggGcUGGaCCGCg -3'
miRNA:   3'- -CCG-CACCAC--UUGCCauUuACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 167052 0.74 0.775675
Target:  5'- cGGCGUGGcgcucaUGAcgcCGGUGcc-GGCCCACa -3'
miRNA:   3'- -CCGCACC------ACUu--GCCAUuuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 168138 0.69 0.95943
Target:  5'- aGCGccgugGGUGGACGGggcgGAAUaggggcgccgcccaGGCCCAUc -3'
miRNA:   3'- cCGCa----CCACUUGCCa---UUUA--------------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 171296 0.69 0.963903
Target:  5'- cGCGUGGgcugGAagGCGGUGcugGGCCUcaACg -3'
miRNA:   3'- cCGCACCa---CU--UGCCAUuuaCCGGG--UG- -5'
14547 5' -53 NC_003521.1 + 176822 1.12 0.006047
Target:  5'- gGGCGUGGUGAACGGUAAAUGGCCCACu -3'
miRNA:   3'- -CCGCACCACUUGCCAUUUACCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.