miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 46173 0.66 0.993396
Target:  5'- uGCGUGG-GAGUGGUGAugGGCUgCACg -3'
miRNA:   3'- cCGCACCaCUUGCCAUUuaCCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 50506 0.73 0.828499
Target:  5'- cGGCGgcGGUGGagAUGGUAccAAUGGgCCGCg -3'
miRNA:   3'- -CCGCa-CCACU--UGCCAU--UUACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 50845 0.66 0.989657
Target:  5'- cGGCGgcuuuuugagaaGGUGGACGGgucccUGAGgaacggcucggcGGCCCGCa -3'
miRNA:   3'- -CCGCa-----------CCACUUGCC-----AUUUa-----------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 52286 0.7 0.940138
Target:  5'- cGGCGUucauGGUGAugGcgacGUGg--GGCCCGCc -3'
miRNA:   3'- -CCGCA----CCACUugC----CAUuuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 58851 0.7 0.940138
Target:  5'- uGGCGcGGaUGcccAGCaGGUAAA-GGCCCACg -3'
miRNA:   3'- -CCGCaCC-AC---UUG-CCAUUUaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 59718 0.66 0.991358
Target:  5'- cGcCGUGGccGAGCuGGUGGAcaUGGCCUAUc -3'
miRNA:   3'- cC-GCACCa-CUUG-CCAUUU--ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 64032 0.7 0.925164
Target:  5'- -aCGUcaauGACGGUAAAUGGCCCGCc -3'
miRNA:   3'- ccGCAccacUUGCCAUUUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 69095 0.68 0.977188
Target:  5'- uGGCGUGGUGGuacuuggugugcACGGUGuuauuguggaugacGGUGGgUgGCa -3'
miRNA:   3'- -CCGCACCACU------------UGCCAU--------------UUACCgGgUG- -5'
14547 5' -53 NC_003521.1 + 69245 0.66 0.991358
Target:  5'- uGGUGcUGGUGAugAUGGUGGccgacGUGGCaaGCg -3'
miRNA:   3'- -CCGC-ACCACU--UGCCAUU-----UACCGggUG- -5'
14547 5' -53 NC_003521.1 + 74899 0.7 0.925164
Target:  5'- cGCGagacGGUGGcgGCGGUGGAgucGGCCCGg -3'
miRNA:   3'- cCGCa---CCACU--UGCCAUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 86614 0.67 0.985816
Target:  5'- -uCGUGGUG-GCGGUAGAgcaggaaGCCCAg -3'
miRNA:   3'- ccGCACCACuUGCCAUUUac-----CGGGUg -5'
14547 5' -53 NC_003521.1 + 87738 0.73 0.820086
Target:  5'- cGGCGUGGUGGGCcccGGcccg-GGCCCcgGCg -3'
miRNA:   3'- -CCGCACCACUUG---CCauuuaCCGGG--UG- -5'
14547 5' -53 NC_003521.1 + 89252 0.7 0.944663
Target:  5'- gGGCGUGcUGAcGCGGUGAcacgagacGCCCGCg -3'
miRNA:   3'- -CCGCACcACU-UGCCAUUuac-----CGGGUG- -5'
14547 5' -53 NC_003521.1 + 90973 0.66 0.988574
Target:  5'- cGGCGUGGUuuaugggauggcGACGGUuaccUGGCaaCCACg -3'
miRNA:   3'- -CCGCACCAc-----------UUGCCAuuu-ACCG--GGUG- -5'
14547 5' -53 NC_003521.1 + 98227 0.68 0.97548
Target:  5'- cGGCGUGG-GAgGCGGgGAGgcgggGGCggCCACg -3'
miRNA:   3'- -CCGCACCaCU-UGCCaUUUa----CCG--GGUG- -5'
14547 5' -53 NC_003521.1 + 102017 0.66 0.993396
Target:  5'- gGGCGUGGuUGAGCacc---UGGgCCACg -3'
miRNA:   3'- -CCGCACC-ACUUGccauuuACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 103473 0.68 0.97548
Target:  5'- uGCG-GGaGGGCGGcuccAGcgGGCCCGCg -3'
miRNA:   3'- cCGCaCCaCUUGCCa---UUuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 103546 0.69 0.948959
Target:  5'- aGGCGUGcGUGGggaugACGGggcccAGGUcGCCCGCg -3'
miRNA:   3'- -CCGCAC-CACU-----UGCCa----UUUAcCGGGUG- -5'
14547 5' -53 NC_003521.1 + 111196 0.69 0.953027
Target:  5'- cGCGgacGGUGGGCuGGgcGAUGGCgCCGg -3'
miRNA:   3'- cCGCa--CCACUUG-CCauUUACCG-GGUg -5'
14547 5' -53 NC_003521.1 + 117898 0.67 0.985816
Target:  5'- cGGUGcUGGUGAGCGGUAAucAUaGCaaCGCa -3'
miRNA:   3'- -CCGC-ACCACUUGCCAUU--UAcCGg-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.