miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 368 0.67 0.981985
Target:  5'- cGGCGUGcuGUGGAacgaaGGUGAGugugugcUGGCgCGCg -3'
miRNA:   3'- -CCGCAC--CACUUg----CCAUUU-------ACCGgGUG- -5'
14547 5' -53 NC_003521.1 + 12357 0.68 0.973944
Target:  5'- gGGCGUGGUGGGCGaGUcgcuacccuccGGCCUc- -3'
miRNA:   3'- -CCGCACCACUUGC-CAuuua-------CCGGGug -5'
14547 5' -53 NC_003521.1 + 18260 0.7 0.934892
Target:  5'- aGCgGUGGUGGggaccugcccgcgACGGgag--GGCCCGCa -3'
miRNA:   3'- cCG-CACCACU-------------UGCCauuuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 18329 0.67 0.980337
Target:  5'- cGGCGUGGUGcuguuggaccaguuCGGc--GUGGUCUACu -3'
miRNA:   3'- -CCGCACCACuu------------GCCauuUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 19152 0.81 0.417023
Target:  5'- cGGCGUGGUGAccgagagcACGGcgcuGGUGGCCgACg -3'
miRNA:   3'- -CCGCACCACU--------UGCCau--UUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 19905 0.71 0.908087
Target:  5'- cGGCGUGcGgGAGCGGcuGGUGGUCCu- -3'
miRNA:   3'- -CCGCAC-CaCUUGCCauUUACCGGGug -5'
14547 5' -53 NC_003521.1 + 23581 0.67 0.982183
Target:  5'- --gGUGGUGGgcGCGGgggugcUGGCCUGCa -3'
miRNA:   3'- ccgCACCACU--UGCCauuu--ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 24363 0.67 0.987252
Target:  5'- aGGUGcUGGUGAugcugAUGGUAGuucucaaaaagccGgcgccgGGCCCGCg -3'
miRNA:   3'- -CCGC-ACCACU-----UGCCAUU-------------Ua-----CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 26532 0.66 0.991358
Target:  5'- -cCGUGGUGAugGGcauccUGGCCUc- -3'
miRNA:   3'- ccGCACCACUugCCauuu-ACCGGGug -5'
14547 5' -53 NC_003521.1 + 30788 0.66 0.990168
Target:  5'- uGGaUGUGG-GcGCGGUAGcgcaccgagGGCCCGCc -3'
miRNA:   3'- -CC-GCACCaCuUGCCAUUua-------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 31020 0.67 0.982961
Target:  5'- cGGCGaggacgcguucguggUGGUGGGgGGUGGGaGGaCCACg -3'
miRNA:   3'- -CCGC---------------ACCACUUgCCAUUUaCCgGGUG- -5'
14547 5' -53 NC_003521.1 + 32140 0.68 0.977892
Target:  5'- gGGCGcGGUGcaccaAGCGGcgGAagGcGCCCGCg -3'
miRNA:   3'- -CCGCaCCAC-----UUGCCa-UUuaC-CGGGUG- -5'
14547 5' -53 NC_003521.1 + 32193 0.67 0.985816
Target:  5'- uGCG-GGUcGGGCauGGUGggGAUGGCUCGCa -3'
miRNA:   3'- cCGCaCCA-CUUG--CCAU--UUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 33640 0.66 0.990778
Target:  5'- aGGcCGUGGagGGGCGGccagcagagcggGAuccagcgaccggccGUGGCCCGCa -3'
miRNA:   3'- -CC-GCACCa-CUUGCCa-----------UU--------------UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 36416 0.66 0.991358
Target:  5'- gGGCGUGGauuucGCGGUcgGaGGgCCGCg -3'
miRNA:   3'- -CCGCACCacu--UGCCAuuUaCCgGGUG- -5'
14547 5' -53 NC_003521.1 + 36725 0.66 0.99426
Target:  5'- aGGCGcaGUGGcgccaccaGGUGcacGUGGCCCACg -3'
miRNA:   3'- -CCGCacCACUug------CCAUu--UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 37474 0.71 0.888938
Target:  5'- aGGCGUGuGUGGacGCGGUcugccccccggcGuuuucgGGCCCGCg -3'
miRNA:   3'- -CCGCAC-CACU--UGCCA------------Uuua---CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 38240 0.67 0.985816
Target:  5'- cGGCG-GGcgGGGCGG-AGAcgcGGCCCAg -3'
miRNA:   3'- -CCGCaCCa-CUUGCCaUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 40690 0.67 0.981985
Target:  5'- cGGCGUGcuGUGGAacgaaGGUGAGugugugcUGGCgCGCg -3'
miRNA:   3'- -CCGCAC--CACUUg----CCAUUU-------ACCGgGUG- -5'
14547 5' -53 NC_003521.1 + 45558 0.7 0.927282
Target:  5'- cGGCGaaUGGUGAGCGuGgagcccuucucgcccUAcucGGUGGCCUACa -3'
miRNA:   3'- -CCGC--ACCACUUGC-C---------------AU---UUACCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.