miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 238468 0.67 0.985816
Target:  5'- cGGCG-GGcgGGGCGG-AGAcgcGGCCCAg -3'
miRNA:   3'- -CCGCaCCa-CUUGCCaUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 237394 0.67 0.980124
Target:  5'- cGGCGUcGGcauGGCGGgggucUGAGUGGCCC-Ca -3'
miRNA:   3'- -CCGCA-CCac-UUGCC-----AUUUACCGGGuG- -5'
14547 5' -53 NC_003521.1 + 232575 0.69 0.948959
Target:  5'- uGUGUGGUGAGCGGgg---GGCgaCAUg -3'
miRNA:   3'- cCGCACCACUUGCCauuuaCCGg-GUG- -5'
14547 5' -53 NC_003521.1 + 228257 0.68 0.972882
Target:  5'- cGcCGUGGUGGuCGGUu--UGGCCagCACg -3'
miRNA:   3'- cC-GCACCACUuGCCAuuuACCGG--GUG- -5'
14547 5' -53 NC_003521.1 + 224822 0.66 0.992432
Target:  5'- gGGCGUcugcGGcuGGCGGUAGAUGGaCUCGg -3'
miRNA:   3'- -CCGCA----CCacUUGCCAUUUACC-GGGUg -5'
14547 5' -53 NC_003521.1 + 224434 0.67 0.984078
Target:  5'- uGCGUGGUGGGCGagc---GGUCCAg -3'
miRNA:   3'- cCGCACCACUUGCcauuuaCCGGGUg -5'
14547 5' -53 NC_003521.1 + 222009 0.68 0.970091
Target:  5'- cGGCGUGG---GCGGgaagcacuUGGCCaCGCg -3'
miRNA:   3'- -CCGCACCacuUGCCauuu----ACCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 220993 0.71 0.901931
Target:  5'- cGCG-GGcGAACGuGUAGGUGGCCaGCg -3'
miRNA:   3'- cCGCaCCaCUUGC-CAUUUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 218380 0.66 0.991245
Target:  5'- aGGCGUGccgcGUGAagcgcggGCGGUAcucGGCCaCGCc -3'
miRNA:   3'- -CCGCAC----CACU-------UGCCAUuuaCCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 213749 0.67 0.982183
Target:  5'- aGGcCGUGGUG-GCGGccacguagaAGAUGGCCaGCg -3'
miRNA:   3'- -CC-GCACCACuUGCCa--------UUUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 213203 0.7 0.925164
Target:  5'- aGCGUGaucuUGAACauGGUGAugaGGCCCACg -3'
miRNA:   3'- cCGCACc---ACUUG--CCAUUua-CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 209555 0.68 0.967099
Target:  5'- cGGCGgGGUGGcggcgACGGUGGcgggGGUCCGg -3'
miRNA:   3'- -CCGCaCCACU-----UGCCAUUua--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 206615 0.68 0.978806
Target:  5'- gGGCGccgucuacgccgcccUGGUGGGCcacgauaagcuGGUcAAGuUGGCCCGCg -3'
miRNA:   3'- -CCGC---------------ACCACUUG-----------CCA-UUU-ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 206436 0.69 0.947694
Target:  5'- gGGCGUGGUGuagcgauugacgugGGCGGggGAUuGCCC-Ca -3'
miRNA:   3'- -CCGCACCAC--------------UUGCCauUUAcCGGGuG- -5'
14547 5' -53 NC_003521.1 + 203335 0.74 0.79745
Target:  5'- aGCGUGGcGAugGGgguGcccugcggcaccacgGUGGCCCGCg -3'
miRNA:   3'- cCGCACCaCUugCCau-U---------------UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 199779 0.66 0.991358
Target:  5'- aGGCuucGGUGGuACGG---AUGGCCUGCa -3'
miRNA:   3'- -CCGca-CCACU-UGCCauuUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 198831 0.66 0.993396
Target:  5'- gGGUGUGGgacAACGGUuuuGGUGGUCgAa -3'
miRNA:   3'- -CCGCACCac-UUGCCAu--UUACCGGgUg -5'
14547 5' -53 NC_003521.1 + 196952 0.67 0.987099
Target:  5'- aGCGUGGgcgacggcccggGAGcCGGccggggcgccugUGAcgGGCCCGCg -3'
miRNA:   3'- cCGCACCa-----------CUU-GCC------------AUUuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 193312 0.7 0.930389
Target:  5'- gGGgGUGGUGGgcACGGUGggGGUGGucgccuucguuCCCAUg -3'
miRNA:   3'- -CCgCACCACU--UGCCAU--UUACC-----------GGGUG- -5'
14547 5' -53 NC_003521.1 + 190580 0.67 0.980124
Target:  5'- cGGCGUGaucgaGGGCGagGAGUGGcCCCGCg -3'
miRNA:   3'- -CCGCACca---CUUGCcaUUUACC-GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.