miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 148441 0.68 0.975229
Target:  5'- cGGCGgcuccaggGGUGGcCGGUGcGUGcugaugacgaaaaGCCCGCg -3'
miRNA:   3'- -CCGCa-------CCACUuGCCAUuUAC-------------CGGGUG- -5'
14547 5' -53 NC_003521.1 + 206436 0.69 0.947694
Target:  5'- gGGCGUGGUGuagcgauugacgugGGCGGggGAUuGCCC-Ca -3'
miRNA:   3'- -CCGCACCAC--------------UUGCCauUUAcCGGGuG- -5'
14547 5' -53 NC_003521.1 + 103546 0.69 0.948959
Target:  5'- aGGCGUGcGUGGggaugACGGggcccAGGUcGCCCGCg -3'
miRNA:   3'- -CCGCAC-CACU-----UGCCa----UUUAcCGGGUG- -5'
14547 5' -53 NC_003521.1 + 232575 0.69 0.948959
Target:  5'- uGUGUGGUGAGCGGgg---GGCgaCAUg -3'
miRNA:   3'- cCGCACCACUUGCCauuuaCCGg-GUG- -5'
14547 5' -53 NC_003521.1 + 111196 0.69 0.953027
Target:  5'- cGCGgacGGUGGGCuGGgcGAUGGCgCCGg -3'
miRNA:   3'- cCGCa--CCACUUG-CCauUUACCG-GGUg -5'
14547 5' -53 NC_003521.1 + 134697 0.68 0.967099
Target:  5'- ---cUGGUG-GCGGUAGGU-GCCCACg -3'
miRNA:   3'- ccgcACCACuUGCCAUUUAcCGGGUG- -5'
14547 5' -53 NC_003521.1 + 209555 0.68 0.967099
Target:  5'- cGGCGgGGUGGcggcgACGGUGGcgggGGUCCGg -3'
miRNA:   3'- -CCGCaCCACU-----UGCCAUUua--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 124098 0.68 0.969214
Target:  5'- cGGCGUGGgcggGAAgcagcgcgucgcugUGGUGAuucccGCCCGCg -3'
miRNA:   3'- -CCGCACCa---CUU--------------GCCAUUuac--CGGGUG- -5'
14547 5' -53 NC_003521.1 + 222009 0.68 0.970091
Target:  5'- cGGCGUGG---GCGGgaagcacuUGGCCaCGCg -3'
miRNA:   3'- -CCGCACCacuUGCCauuu----ACCGG-GUG- -5'
14547 5' -53 NC_003521.1 + 129218 0.7 0.940138
Target:  5'- cGCGUGGUGGGCaGUcc--GGCgCCGCu -3'
miRNA:   3'- cCGCACCACUUGcCAuuuaCCG-GGUG- -5'
14547 5' -53 NC_003521.1 + 58851 0.7 0.940138
Target:  5'- uGGCGcGGaUGcccAGCaGGUAAA-GGCCCACg -3'
miRNA:   3'- -CCGCaCC-AC---UUG-CCAUUUaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 52286 0.7 0.940138
Target:  5'- cGGCGUucauGGUGAugGcgacGUGg--GGCCCGCc -3'
miRNA:   3'- -CCGCA----CCACUugC----CAUuuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 19152 0.81 0.417023
Target:  5'- cGGCGUGGUGAccgagagcACGGcgcuGGUGGCCgACg -3'
miRNA:   3'- -CCGCACCACU--------UGCCau--UUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 124196 0.78 0.547699
Target:  5'- cGGCugggGGUGAGCGGgcccuuucUGGCCCGCg -3'
miRNA:   3'- -CCGca--CCACUUGCCauuu----ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 220993 0.71 0.901931
Target:  5'- cGCG-GGcGAACGuGUAGGUGGCCaGCg -3'
miRNA:   3'- cCGCaCCaCUUGC-CAUUUACCGGgUG- -5'
14547 5' -53 NC_003521.1 + 19905 0.71 0.908087
Target:  5'- cGGCGUGcGgGAGCGGcuGGUGGUCCu- -3'
miRNA:   3'- -CCGCAC-CaCUUGCCauUUACCGGGug -5'
14547 5' -53 NC_003521.1 + 213203 0.7 0.925164
Target:  5'- aGCGUGaucuUGAACauGGUGAugaGGCCCACg -3'
miRNA:   3'- cCGCACc---ACUUG--CCAUUua-CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 45558 0.7 0.927282
Target:  5'- cGGCGaaUGGUGAGCGuGgagcccuucucgcccUAcucGGUGGCCUACa -3'
miRNA:   3'- -CCGC--ACCACUUGC-C---------------AU---UUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 193312 0.7 0.930389
Target:  5'- gGGgGUGGUGGgcACGGUGggGGUGGucgccuucguuCCCAUg -3'
miRNA:   3'- -CCgCACCACU--UGCCAU--UUACC-----------GGGUG- -5'
14547 5' -53 NC_003521.1 + 18260 0.7 0.934892
Target:  5'- aGCgGUGGUGGggaccugcccgcgACGGgag--GGCCCGCa -3'
miRNA:   3'- cCG-CACCACU-------------UGCCauuuaCCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.