miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 5' -53 NC_003521.1 + 167052 0.74 0.775675
Target:  5'- cGGCGUGGcgcucaUGAcgcCGGUGcc-GGCCCACa -3'
miRNA:   3'- -CCGCACC------ACUu--GCCAUuuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 103473 0.68 0.97548
Target:  5'- uGCG-GGaGGGCGGcuccAGcgGGCCCGCg -3'
miRNA:   3'- cCGCaCCaCUUGCCa---UUuaCCGGGUG- -5'
14547 5' -53 NC_003521.1 + 206615 0.68 0.978806
Target:  5'- gGGCGccgucuacgccgcccUGGUGGGCcacgauaagcuGGUcAAGuUGGCCCGCg -3'
miRNA:   3'- -CCGC---------------ACCACUUG-----------CCA-UUU-ACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 36725 0.66 0.99426
Target:  5'- aGGCGcaGUGGcgccaccaGGUGcacGUGGCCCACg -3'
miRNA:   3'- -CCGCacCACUug------CCAUu--UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 37474 0.71 0.888938
Target:  5'- aGGCGUGuGUGGacGCGGUcugccccccggcGuuuucgGGCCCGCg -3'
miRNA:   3'- -CCGCAC-CACU--UGCCA------------Uuua---CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 184867 0.71 0.901931
Target:  5'- cGGCGUGGUGGggcugcacACGGUGcucAUGcGCCUggGCu -3'
miRNA:   3'- -CCGCACCACU--------UGCCAUu--UAC-CGGG--UG- -5'
14547 5' -53 NC_003521.1 + 64032 0.7 0.925164
Target:  5'- -aCGUcaauGACGGUAAAUGGCCCGCc -3'
miRNA:   3'- ccGCAccacUUGCCAUUUACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 74899 0.7 0.925164
Target:  5'- cGCGagacGGUGGcgGCGGUGGAgucGGCCCGg -3'
miRNA:   3'- cCGCa---CCACU--UGCCAUUUa--CCGGGUg -5'
14547 5' -53 NC_003521.1 + 168138 0.69 0.95943
Target:  5'- aGCGccgugGGUGGACGGggcgGAAUaggggcgccgcccaGGCCCAUc -3'
miRNA:   3'- cCGCa----CCACUUGCCa---UUUA--------------CCGGGUG- -5'
14547 5' -53 NC_003521.1 + 98227 0.68 0.97548
Target:  5'- cGGCGUGG-GAgGCGGgGAGgcgggGGCggCCACg -3'
miRNA:   3'- -CCGCACCaCU-UGCCaUUUa----CCG--GGUG- -5'
14547 5' -53 NC_003521.1 + 171296 0.69 0.963903
Target:  5'- cGCGUGGgcugGAagGCGGUGcugGGCCUcaACg -3'
miRNA:   3'- cCGCACCa---CU--UGCCAUuuaCCGGG--UG- -5'
14547 5' -53 NC_003521.1 + 89252 0.7 0.944663
Target:  5'- gGGCGUGcUGAcGCGGUGAcacgagacGCCCGCg -3'
miRNA:   3'- -CCGCACcACU-UGCCAUUuac-----CGGGUG- -5'
14547 5' -53 NC_003521.1 + 203335 0.74 0.79745
Target:  5'- aGCGUGGcGAugGGgguGcccugcggcaccacgGUGGCCCGCg -3'
miRNA:   3'- cCGCACCaCUugCCau-U---------------UACCGGGUG- -5'
14547 5' -53 NC_003521.1 + 228257 0.68 0.972882
Target:  5'- cGcCGUGGUGGuCGGUu--UGGCCagCACg -3'
miRNA:   3'- cC-GCACCACUuGCCAuuuACCGG--GUG- -5'
14547 5' -53 NC_003521.1 + 87738 0.73 0.820086
Target:  5'- cGGCGUGGUGGGCcccGGcccg-GGCCCcgGCg -3'
miRNA:   3'- -CCGCACCACUUG---CCauuuaCCGGG--UG- -5'
14547 5' -53 NC_003521.1 + 164217 0.7 0.940138
Target:  5'- cGGCgGUGGUagcggcggcuGGACGGUGGA-GGCUCGg -3'
miRNA:   3'- -CCG-CACCA----------CUUGCCAUUUaCCGGGUg -5'
14547 5' -53 NC_003521.1 + 12357 0.68 0.973944
Target:  5'- gGGCGUGGUGGGCGaGUcgcuacccuccGGCCUc- -3'
miRNA:   3'- -CCGCACCACUUGC-CAuuua-------CCGGGug -5'
14547 5' -53 NC_003521.1 + 69095 0.68 0.977188
Target:  5'- uGGCGUGGUGGuacuuggugugcACGGUGuuauuguggaugacGGUGGgUgGCa -3'
miRNA:   3'- -CCGCACCACU------------UGCCAU--------------UUACCgGgUG- -5'
14547 5' -53 NC_003521.1 + 50506 0.73 0.828499
Target:  5'- cGGCGgcGGUGGagAUGGUAccAAUGGgCCGCg -3'
miRNA:   3'- -CCGCa-CCACU--UGCCAU--UUACCgGGUG- -5'
14547 5' -53 NC_003521.1 + 163815 0.7 0.919705
Target:  5'- cGGCGUGGUcAACGGcauGAUGccgugccuGCCCAUc -3'
miRNA:   3'- -CCGCACCAcUUGCCau-UUAC--------CGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.